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1. janelia-cellmap/dacapo janelia-cellmap/dacapo Public

   A framework for easy application of established machine learning techniques on large, multi-dimensional images.

   Python 45 7

2. janelia-cellmap/cellmap-models janelia-cellmap/cellmap-models Public

   Repository of model architectures and network weights used for CellMap segmentations.

   Python 9

3. htem/raygun htem/raygun Public

   An image enhancement and segmentation pipeline for generating connectomic reconstructions from X-ray holographic nanotomography, using CycleGANs, Local Shape Descriptors, and Mutex Watershed. Built…

   Python 3 1

4. funkelab/gunpowder funkelab/gunpowder Public

   A library to facilitate machine learning on multi-dimensional images.

   Python 77 55

5. funkelab/daisy funkelab/daisy Public

   Block-wise task scheduling for large nD volumes.

   Python 27 17

6. janelia-cellmap/cellmap-data janelia-cellmap/cellmap-data Public

   Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

   Python 1 1