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@rhoadesScholar
rhoadesScholar authored Mar 12, 2024
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Expand Up @@ -18,14 +18,12 @@ This package contains the models used for segmention by the CellMap project team

## Installation

We strongly recommend using a [conda](https://docs.anaconda.com/free/miniconda/#quick-command-line-install) (or [mamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html#automatic-install)) environment to install the package. First, clone the repository and then create a new environment with the required dependencies:
We strongly recommend installing within a [conda](https://docs.anaconda.com/free/miniconda/#quick-command-line-install) (or [mamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html#automatic-install)) environment to install the package.

```bash
git clone https://github.com/janelia-cellmap/cellmap-models
cd cellmap-models
conda env create -n cellmap python=3.10 pytorch -c pytorch -c conda-forge
conda activate cellmap
pip install .
pip install git+https://github.com/janelia-cellmap/cellmap-models
```

## Usage
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