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Pre commit ci#43

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ilsenatorov wants to merge 54 commits intomasterilsenatorov/rindti:masterfrom pre_commit_ciilsenatorov/rindti:pre_commit_ciCopy head branch name to clipboard

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Commits on May 23, 2022

• config changes

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• updated pre-commit versions

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• dri tests work from new test_data

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• improved code reusability

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Commits on May 24, 2022

• Bugs with snakemake fixed

  

  Roman Joeres

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  b44b09b

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• pretraining tests pass

  ilsenatorov

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  c00c6db

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• moved dimensions calculations to a separate part of the final dict

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• added prot pretrainin to snakemake

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• refactored the pretrain data generation

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• small fix

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• updated conftest with new pretraining

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• config changes

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• updated pre-commit versions

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• Merge branch 'master' into i_conftest

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• encoders are now separate layer type

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• Merge branch 'master' into roman_dev

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  Roman Joeres

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• config changes

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• updated pre-commit versions

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• Merge branch 'master' into i_encoders

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  8cf4e48

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• updated tests

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  445d048

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• updated version

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• Some baseline implemented

  

  Roman Joeres

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Commits on May 25, 2022

• Half precision implemented

  

  Roman Joeres

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  6bf7a6f

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• moved esm test to a separate function for marking

  ilsenatorov

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• Merge branch 'dev' into r_dev

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• added comments and stuff for the baseline code

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  e23cc0f

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• Merge pull request #37 from ilsenatorov/r_dev

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  ilsenatorov

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• removed old classes and functions, updated workflow to print coverage

  ilsenatorov

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  673c22a

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• adds tests to encoders, fixes #30

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Commits on May 26, 2022

• fixes #39, faster testing

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Commits on May 27, 2022

• config changes

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  5a86e3d

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• updated pre-commit versions

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  242d875

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• Merge branch 'dev' into encoders

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  d018749

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• Minor bugs fixed

  

  Roman Joeres

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  Roman Joeres

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  5d44b5d

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• updated conftest tests to also run from within python

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  70de2c8

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• removed redundancy from test_snakemake

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• Bugs for Pull Request fixed

  

  Roman Joeres

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  Roman Joeres

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  d2a7f9a

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• Merge pull request #40 from ilsenatorov/encoders

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• intentionally broken code that doesn't pass pre-commit

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• faster testing in ci

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• codecov test

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• more ci for ci gods

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• even more ci

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• simpler testing?

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  0c68257

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• removed martix

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• reverted test.yaml changes

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  50b30ec

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• split snakemake and rindti testing

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• meme

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• Revert "split snakemake and rindti testing"

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• meme n2

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• Revert "meme n2"

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• Revert "Revert "split snakemake and rindti testing""

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• meme n3

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