Update docs build

hyperspy · Feb 16, 2024 · 835e560 · 835e560
1 parent b547b61
commit 835e560
Show file tree

Hide file tree

Showing 16 changed files with 55 additions and 62 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: f2c72d0bf469fcc9747d8790cbddc772
+config: b602f9b47f0c49089c386be62ee40619
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
-      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]      0%|                                     | 12.3k/42.3M [00:00<08:10, 86.1kB/s]      0%|                                      | 35.8k/42.3M [00:00<05:20, 132kB/s]      0%|                                       | 110k/42.3M [00:00<02:17, 306kB/s]      1%|▏                                      | 216k/42.3M [00:00<01:27, 478kB/s]      1%|▍                                      | 446k/42.3M [00:00<00:47, 884kB/s]      2%|▊                                     | 937k/42.3M [00:00<00:23, 1.74MB/s]      4%|█▋                                   | 1.89M/42.3M [00:01<00:12, 3.33MB/s]      9%|███▎                                 | 3.80M/42.3M [00:01<00:05, 6.50MB/s]     14%|█████▏                               | 5.92M/42.3M [00:01<00:03, 9.09MB/s]     19%|██████▉                              | 7.95M/42.3M [00:01<00:03, 10.6MB/s]     24%|████████▊                            | 10.0M/42.3M [00:01<00:02, 11.8MB/s]     29%|██████████▌                          | 12.1M/42.3M [00:01<00:02, 12.6MB/s]     34%|████████████▍                        | 14.2M/42.3M [00:01<00:02, 13.1MB/s]     38%|██████████████▏                      | 16.3M/42.3M [00:02<00:01, 13.6MB/s]     43%|████████████████                     | 18.3M/42.3M [00:02<00:01, 13.8MB/s]     48%|█████████████████▉                   | 20.4M/42.3M [00:02<00:01, 14.1MB/s]     53%|███████████████████▋                 | 22.5M/42.3M [00:02<00:01, 14.1MB/s]     58%|█████████████████████▌               | 24.6M/42.3M [00:02<00:01, 14.3MB/s]     63%|███████████████████████▎             | 26.7M/42.3M [00:02<00:01, 14.3MB/s]     68%|█████████████████████████▏           | 28.8M/42.3M [00:02<00:00, 14.4MB/s]     73%|██████████████████████████▉          | 30.8M/42.3M [00:03<00:00, 14.4MB/s]     78%|████████████████████████████▊        | 32.9M/42.3M [00:03<00:00, 14.4MB/s]     83%|██████████████████████████████▌      | 35.0M/42.3M [00:03<00:00, 14.3MB/s]     88%|████████████████████████████████▍    | 37.0M/42.3M [00:03<00:00, 14.3MB/s]     93%|██████████████████████████████████▏  | 39.1M/42.3M [00:03<00:00, 14.4MB/s]     97%|████████████████████████████████████ | 41.2M/42.3M [00:03<00:00, 14.4MB/s]      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 238GB/s]
+      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]      0%|                                      | 34.8k/42.3M [00:00<03:44, 189kB/s]      0%|                                       | 118k/42.3M [00:00<02:03, 341kB/s]      1%|▎                                      | 355k/42.3M [00:00<00:54, 770kB/s]      3%|█                                    | 1.26M/42.3M [00:00<00:14, 2.92MB/s]      6%|██▎                                  | 2.58M/42.3M [00:00<00:06, 5.72MB/s]     11%|███▉                                 | 4.51M/42.3M [00:00<00:03, 9.51MB/s]     17%|██████▍                              | 7.32M/42.3M [00:01<00:02, 12.5MB/s]     24%|████████▉                            | 10.2M/42.3M [00:01<00:01, 16.7MB/s]     30%|███████████▎                         | 12.9M/42.3M [00:01<00:01, 19.3MB/s]     37%|█████████████▊                       | 15.8M/42.3M [00:01<00:01, 22.1MB/s]     44%|████████████████▏                    | 18.5M/42.3M [00:01<00:01, 19.9MB/s]     51%|██████████████████▋                  | 21.4M/42.3M [00:01<00:00, 22.2MB/s]     57%|█████████████████████▏               | 24.2M/42.3M [00:01<00:00, 23.6MB/s]     64%|███████████████████████▋             | 27.1M/42.3M [00:01<00:00, 25.2MB/s]     71%|██████████████████████████▏          | 29.9M/42.3M [00:01<00:00, 26.1MB/s]     77%|████████████████████████████▌        | 32.6M/42.3M [00:02<00:00, 22.3MB/s]     84%|███████████████████████████████      | 35.5M/42.3M [00:02<00:00, 24.1MB/s]     91%|█████████████████████████████████▌   | 38.4M/42.3M [00:02<00:00, 25.3MB/s]     98%|████████████████████████████████████▏| 41.4M/42.3M [00:02<00:00, 26.6MB/s]      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 184GB/s]
 
 
 
@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 10.015 seconds)
+   **Total running time of the script:** (0 minutes 9.214 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:

diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,15 +110,15 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7fc2e07aa840>
+    Exception ignored in: <function tqdm.__del__ at 0x7f0beae96840>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py", line 1148, in __del__
         self.close()
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/notebook.py", line 279, in close
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
-      0%|          | 0/10 [00:00<?, ?it/s]    100%|██████████| 10/10 [00:00<00:00, 1195.81it/s]
+      0%|          | 0/10 [00:00<?, ?it/s]    100%|██████████| 10/10 [00:00<00:00, 1462.25it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.532 seconds)
+   **Total running time of the script:** (0 minutes 0.563 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:

diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:10.918** total execution time for 3 files **from auto_examples/model_fitting**:
+**00:10.143** total execution time for 3 files **from auto_examples/model_fitting**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``)
-     - 00:10.015
+     - 00:09.214
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)
-     - 00:00.532
+     - 00:00.563
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)
-     - 00:00.372
+     - 00:00.365
      - 0.0
diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 1.00047784 | 0.00204201 |       None |       None |   True
-                 k |    True | 1.11203554 | 0.09575265 |       None |       None |  False
-                x0 |    True | -0.0523038 | 0.07160969 |       None |       None |  False
+                 A |    True | 1.00003329 | 0.00209114 |       None |       None |   True
+                 k |    True | 0.84875916 | 0.06452756 |       None |       None |  False
+                x0 |    True | -0.0274064 | 0.08462546 |       None |       None |  False
 
 
 
@@ -91,7 +91,7 @@ Fit an arctan function.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.372 seconds)
+   **Total running time of the script:** (0 minutes 0.365 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_simple_arctan_fit.py:

diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:10.918** total execution time for 3 files **from all galleries**:
+**00:10.143** total execution time for 3 files **from all galleries**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``../examples/model_fitting/EELS_curve_fitting.py``)
-     - 00:10.015
+     - 00:09.214
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``../examples/model_fitting/plot_residual.py``)
-     - 00:00.532
+     - 00:00.563
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``../examples/model_fitting/simple_arctan_fit.py``)
-     - 00:00.372
+     - 00:00.365
      - 0.0
diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -471,34 +471,27 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-  0%|                                     | 12.3k/42.3M [00:00&lt;08:10, 86.1kB/s]
-  0%|                                      | 35.8k/42.3M [00:00&lt;05:20, 132kB/s]
-  0%|                                       | 110k/42.3M [00:00&lt;02:17, 306kB/s]
-  1%|▏                                      | 216k/42.3M [00:00&lt;01:27, 478kB/s]
-  1%|▍                                      | 446k/42.3M [00:00&lt;00:47, 884kB/s]
-  2%|▊                                     | 937k/42.3M [00:00&lt;00:23, 1.74MB/s]
-  4%|█▋                                   | 1.89M/42.3M [00:01&lt;00:12, 3.33MB/s]
-  9%|███▎                                 | 3.80M/42.3M [00:01&lt;00:05, 6.50MB/s]
- 14%|█████▏                               | 5.92M/42.3M [00:01&lt;00:03, 9.09MB/s]
- 19%|██████▉                              | 7.95M/42.3M [00:01&lt;00:03, 10.6MB/s]
- 24%|████████▊                            | 10.0M/42.3M [00:01&lt;00:02, 11.8MB/s]
- 29%|██████████▌                          | 12.1M/42.3M [00:01&lt;00:02, 12.6MB/s]
- 34%|████████████▍                        | 14.2M/42.3M [00:01&lt;00:02, 13.1MB/s]
- 38%|██████████████▏                      | 16.3M/42.3M [00:02&lt;00:01, 13.6MB/s]
- 43%|████████████████                     | 18.3M/42.3M [00:02&lt;00:01, 13.8MB/s]
- 48%|█████████████████▉                   | 20.4M/42.3M [00:02&lt;00:01, 14.1MB/s]
- 53%|███████████████████▋                 | 22.5M/42.3M [00:02&lt;00:01, 14.1MB/s]
- 58%|█████████████████████▌               | 24.6M/42.3M [00:02&lt;00:01, 14.3MB/s]
- 63%|███████████████████████▎             | 26.7M/42.3M [00:02&lt;00:01, 14.3MB/s]
- 68%|█████████████████████████▏           | 28.8M/42.3M [00:02&lt;00:00, 14.4MB/s]
- 73%|██████████████████████████▉          | 30.8M/42.3M [00:03&lt;00:00, 14.4MB/s]
- 78%|████████████████████████████▊        | 32.9M/42.3M [00:03&lt;00:00, 14.4MB/s]
- 83%|██████████████████████████████▌      | 35.0M/42.3M [00:03&lt;00:00, 14.3MB/s]
- 88%|████████████████████████████████▍    | 37.0M/42.3M [00:03&lt;00:00, 14.3MB/s]
- 93%|██████████████████████████████████▏  | 39.1M/42.3M [00:03&lt;00:00, 14.4MB/s]
- 97%|████████████████████████████████████ | 41.2M/42.3M [00:03&lt;00:00, 14.4MB/s]
+  0%|                                      | 34.8k/42.3M [00:00&lt;03:44, 189kB/s]
+  0%|                                       | 118k/42.3M [00:00&lt;02:03, 341kB/s]
+  1%|▎                                      | 355k/42.3M [00:00&lt;00:54, 770kB/s]
+  3%|█                                    | 1.26M/42.3M [00:00&lt;00:14, 2.92MB/s]
+  6%|██▎                                  | 2.58M/42.3M [00:00&lt;00:06, 5.72MB/s]
+ 11%|███▉                                 | 4.51M/42.3M [00:00&lt;00:03, 9.51MB/s]
+ 17%|██████▍                              | 7.32M/42.3M [00:01&lt;00:02, 12.5MB/s]
+ 24%|████████▉                            | 10.2M/42.3M [00:01&lt;00:01, 16.7MB/s]
+ 30%|███████████▎                         | 12.9M/42.3M [00:01&lt;00:01, 19.3MB/s]
+ 37%|█████████████▊                       | 15.8M/42.3M [00:01&lt;00:01, 22.1MB/s]
+ 44%|████████████████▏                    | 18.5M/42.3M [00:01&lt;00:01, 19.9MB/s]
+ 51%|██████████████████▋                  | 21.4M/42.3M [00:01&lt;00:00, 22.2MB/s]
+ 57%|█████████████████████▏               | 24.2M/42.3M [00:01&lt;00:00, 23.6MB/s]
+ 64%|███████████████████████▋             | 27.1M/42.3M [00:01&lt;00:00, 25.2MB/s]
+ 71%|██████████████████████████▏          | 29.9M/42.3M [00:01&lt;00:00, 26.1MB/s]
+ 77%|████████████████████████████▌        | 32.6M/42.3M [00:02&lt;00:00, 22.3MB/s]
+ 84%|███████████████████████████████      | 35.5M/42.3M [00:02&lt;00:00, 24.1MB/s]
+ 91%|█████████████████████████████████▌   | 38.4M/42.3M [00:02&lt;00:00, 25.3MB/s]
+ 98%|████████████████████████████████████▏| 41.4M/42.3M [00:02&lt;00:00, 26.6MB/s]
   0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 238GB/s]
+100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 184GB/s]
 </pre></div>
 </div>
 <div class="line-block">
@@ -520,7 +513,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 10.015 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 9.214 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/037b5aa4752b41748abf69bba9d1cbe4/EELS_curve_fitting.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">EELS_curve_fitting.ipynb</span></code></a></p>

diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
@@ -492,7 +492,7 @@
 <div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7fc2e07aa840&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f0beae96840&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1148, in __del__
     self.close()
@@ -502,7 +502,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1195.81it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1462.25it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -514,7 +514,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.532 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.563 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/971c2906ad663020c2e6701928a24c9a/plot_residual.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_residual.ipynb</span></code></a></p>