import cell stats (length, area, volume)

hsseung · Aug 21, 2024 · 73ad031 · 73ad031
1 parent d4b4656
commit 73ad031
Show file tree

Hide file tree

Showing 2 changed files with 17 additions and 0 deletions.
diff --git a/src/OpticLobe.jl b/src/OpticLobe.jl
@@ -33,6 +33,9 @@ include("codexdependencies.jl")
 include("cellids.jl")
 export ind2id, id2ind
 
+include("cellstats.jl")
+export cell_length, cell_area, cell_volume
+
 include("celltypes.jl")
 export intrinsictypes, boundarytypes, centraltypes, ind2type, visualtypes, alltypes, ind2nt, A
 

diff --git a/src/codexdependencies.jl b/src/codexdependencies.jl
@@ -2,6 +2,20 @@ using DataDeps
 
 DOWNLOADS = "https://storage.googleapis.com/flywire-data/codex/data/783"
 
+register(DataDep("Codex cell stats",
+ """
+ Dataset: FlyWire v783
+ Author:
+ License:
+ Website: codex.flywire.ai
+
+ Citation: Matsliah et al.
+ """,
+ joinpath(DOWNLOADS, "cell_stats.csv.gz"),
+ "bd5879e1b5df964bea2f3ca5316348d4276ce2ccaac283f0e36583c04fbd3d8e"
+ ));
+
+
 register(DataDep("Codex neuron IDs",
  """
  Dataset: FlyWire v783