OpticLobe

Exploring the neurons and connections of the Drosophila optic lobe.

Code to accompany Matsliah, Yu, et al., 'Neuronal “parts list” and wiring diagram for a visual system'

Version 783 of proofreading.

See https://codex.flywire.ai for more information

Synopsis

julia> using OpticLobe

julia> first(sort(Wtt["Tm1", intrinsictypes], rev=true), 10)
10-element Named SparseArrays.SparseVector{Int32, Int32}
celltype  │
──────────┼──────
Pm03      │ 78694
Pm02      │ 70095
Pm08      │ 49431
T3        │ 35806
T2a       │ 35162
Pm05      │ 29965
Tm21      │ 21059
Y3        │ 20896
LMa5      │ 17871
Pm06      │ 17143

Global variables

ind2id id2ind

intrinsictypes boundarytypes centraltypes visualtypes alltypes ind2type

W A Ai

Wtt Wct Wtc infraction outfraction inmean outmean

class2families family2types

useful functions

toppre toppost

showall, strings2ticks, type2ids, convert2arrows

codex_open

ng_open

ng_hyper

Installation

Building the package downloads data files from the FlyWire Codex, and processes the data to create some useful global variables.