${{\color{Purple}\Huge{\textsf{ChickFunOmics}}}}$ 🐔

Welcome to Chicken Genomics and Epigenomics Functional Regulation.

⭕ ATAC-Seq data analysis repertoire
🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq.md

⭕ FRiP Score
🔗https://github.com/hawkinslab226/ChickFunOmics/blob/main/FRiP_Score.sh
Fraction of reads in peaks (FRiP): FRiP Score essential to evaluate the Peaks Quality. more details: https://yiweiniu.github.io/blog/2019/03/Calculate-FRiP-score/

• Request data: *.bam files & *Peaks files (Narrow or broad)
  
• To calculate the FRiPs run the script
  

bash FRiP_Score.sh  ${bam file}  ${broadPeak or NarrowPeak}

*using MACS2 ouptuts

⭕ RNA-Seq data analysis repertoire

🔹 Differentially Expressed Genes (DGEs)
🔗 https://github.com/hawkinslab226/ChickFunOmics/tree/main/DEGs_analysis

⭕ Cut&Tag data analysis repertoire
🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/C%26T.md