ATACseq.md

Repertoire of Pipelines and Jobs to perform Chromatin Data Analysis (ATAC-Seq)

🔶 Contents:

• ATAC-Seq Codes
  🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/Processing_data.sh
  🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/corr_plot_ATAC.sh
  🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/Calling_QC.sh
  🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/frip_score.sh
  

• ATAC-Seq Jobs
  🔗 https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/atac_step1_job.sh & https://github.com/hawkinslab226/ChickFunOmics/blob/main/ATACseq_folder/atac_step2_job.sh