feat: added per-read flag and map quality filtering #194
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- closes griffithlab#176, CMake was including `src/utils/bedtools/gzstream/version` as a C++ source file, when it was a simple text file containing version info - I moved this version info into `src/utils/bedtools/gzstream/README`
- fixes griffithlab#188, min_intron_length_ was accidentally set from min_anchor_len_
- closes griffithlab#183, flag based filtering - closes griffithlab#189, mapping quality based filtering - option '-F' filters reads containing any of these flags - option '-f' filters reads not containing all these flags - option '-q' filters reads below this mapping quality
TimD1
force-pushed
the
189/td/flag-and-quality-filtering
branch
from
548b60e
to
409a492
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
junctions extract#189, mapping quality based filtering