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Add FhirEngine interface method 'withTransaction' #2535

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857f112
Add FhirEngine interface method 'withTransaction'
LZRS May 6, 2024
5f2e163
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS May 26, 2024
72be126
Only allow FHIREngine CRUD api for withTransaction
LZRS May 26, 2024
e7bff9c
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS May 30, 2024
868877f
Rename BaseFhirEngine to CrudFhirEngine
LZRS May 30, 2024
75b41b5
Move count method back to FhirEngine class
LZRS May 30, 2024
7b769c1
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS Jun 1, 2024
22f0e57
Merge branch 'master' into 2531-fhirengine-interface
LZRS Jun 3, 2024
f048d86
Merge branch 'master' into 2531-fhirengine-interface
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4b1e808
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS Jun 8, 2024
f336d2d
Merge branch 'master' into 2531-fhirengine-interface
LZRS Jun 13, 2024
c1aad5e
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS Jun 14, 2024
892ed27
Update 'withTransaction' tests
LZRS Jun 14, 2024
ddc3ecb
Merge branch 'master' into 2531-fhirengine-interface
LZRS Jun 26, 2024
2d2eec0
Merge branch 'master' into 2531-fhirengine-interface
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52d4147
Merge branch 'master' into 2531-fhirengine-interface
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ff0f0e1
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS Oct 4, 2024
99d3eb0
Merge remote-tracking branch 'upstream/master' into 2531-fhirengine-i…
LZRS Oct 4, 2024
b520d30
Revert to using FhirEngine interface
LZRS Oct 4, 2024
fe0cee6
Merge branch 'master' into 2531-fhirengine-interface
LZRS Oct 8, 2024
faacaec
Simplify tests for fhirengine's withTransaction
LZRS Oct 8, 2024
c2e5f30
Merge branch 'master' into 2531-fhirengine-interface
LZRS Oct 8, 2024
cfd8d10
Merge branch 'master' into 2531-fhirengine-interface
LZRS Oct 15, 2024
480df9c
Refactor update FhirEngineImplTest
LZRS Oct 16, 2024
b33ad9a
Merge branch 'master' into 2531-fhirengine-interface
pld Oct 23, 2024
204c8a6
Merge branch 'master' into 2531-fhirengine-interface
jingtang10 Oct 29, 2024
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114 changes: 66 additions & 48 deletions engine/src/main/java/com/google/android/fhir/FhirEngine.kt
Original file line number Diff line number Diff line change
Expand Up @@ -58,54 +58,7 @@ import org.hl7.fhir.r4.model.ResourceType
* val fhirEngine = FhirEngineProvider.getInstance(this)
* ```
*/
interface FhirEngine {
/**
* Creates one or more FHIR [Resource]s in the local storage. FHIR Engine requires all stored
* resources to have a logical [Resource.id]. If the `id` is specified in the resource passed to
* [create], the resource created in `FhirEngine` will have the same `id`. If no `id` is
* specified, `FhirEngine` will generate a UUID as that resource's `id` and include it in the
* returned list of IDs.
*
* @param resource The FHIR resources to create.
* @return A list of logical IDs of the newly created resources.
*/
suspend fun create(vararg resource: Resource): List<String>

/**
* Loads a FHIR resource given its [ResourceType] and logical ID.
*
* @param type The type of the resource to load.
* @param id The logical ID of the resource.
* @return The requested FHIR resource.
* @throws ResourceNotFoundException if the resource is not found.
*/
@Throws(ResourceNotFoundException::class)
suspend fun get(type: ResourceType, id: String): Resource

/**
* Updates one or more FHIR [Resource]s in the local storage.
*
* @param resource The FHIR resources to update.
*/
suspend fun update(vararg resource: Resource)

/**
* Removes a FHIR resource given its [ResourceType] and logical ID.
*
* @param type The type of the resource to delete.
* @param id The logical ID of the resource.
*/
suspend fun delete(type: ResourceType, id: String)

/**
* Searches the database and returns a list of resources matching the [Search] specifications.
*
* @param search The search criteria to apply.
* @return A list of [SearchResult] objects containing the matching resources and any included
* references.
*/
suspend fun <R : Resource> search(search: Search): List<SearchResult<R>>

interface FhirEngine : CrudFhirEngine {
/**
* Synchronizes upload results with the database.
*
Expand Down Expand Up @@ -204,6 +157,71 @@ interface FhirEngine {
suspend fun purge(type: ResourceType, ids: Set<String>, forcePurge: Boolean = false)
}

interface CrudFhirEngine {
/**
* Creates one or more FHIR [Resource]s in the local storage. FHIR Engine requires all stored
* resources to have a logical [Resource.id]. If the `id` is specified in the resource passed to
* [create], the resource created in `FhirEngine` will have the same `id`. If no `id` is
* specified, `FhirEngine` will generate a UUID as that resource's `id` and include it in the
* returned list of IDs.
*
* @param resource The FHIR resources to create.
* @return A list of logical IDs of the newly created resources.
*/
suspend fun create(vararg resource: Resource): List<String>

/**
* Loads a FHIR resource given its [ResourceType] and logical ID.
*
* @param type The type of the resource to load.
* @param id The logical ID of the resource.
* @return The requested FHIR resource.
* @throws ResourceNotFoundException if the resource is not found.
*/
@Throws(ResourceNotFoundException::class)
suspend fun get(type: ResourceType, id: String): Resource

/**
* Updates one or more FHIR [Resource]s in the local storage.
*
* @param resource The FHIR resources to update.
*/
suspend fun update(vararg resource: Resource)

/**
* Removes a FHIR resource given its [ResourceType] and logical ID.
*
* @param type The type of the resource to delete.
* @param id The logical ID of the resource.
*/
suspend fun delete(type: ResourceType, id: String)

/**
* Searches the database and returns a list of resources matching the [Search] specifications.
*
* Example:
* ```
* fhirEngine.search<Patient> {
* filter(Patient.GIVEN, {
* value = "Kiran"
* modifier = StringFilterModifier.MATCHES_EXACTLY
* })
* }
* ```
*
* @param search The search criteria to apply.
* @return A list of [SearchResult] objects containing the matching resources and any included
* references.
*/
suspend fun <R : Resource> search(search: Search): List<SearchResult<R>>
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/**
* Adds support for performing actions on `FhirEngine` as a single atomic transaction where the
* entire set of changes succeed or fail as a single entity
*/
suspend fun withTransaction(block: suspend CrudFhirEngine.() -> Unit)
}

/**
* Retrieves a FHIR resource of type [R] with the given [id] from the local storage.
*
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@
package com.google.android.fhir.impl

import android.content.Context
import com.google.android.fhir.CrudFhirEngine
import com.google.android.fhir.FhirEngine
import com.google.android.fhir.FhirEngineProvider
import com.google.android.fhir.LocalChange
Expand Down Expand Up @@ -106,6 +107,10 @@ internal class FhirEngineImpl(private val database: Database, private val contex
}
}

override suspend fun withTransaction(block: suspend CrudFhirEngine.() -> Unit) {
database.withTransaction { block.invoke(this@FhirEngineImpl) }
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}

private suspend fun saveResolvedResourcesToDatabase(resolved: List<Resource>?) {
resolved?.let {
database.deleteUpdates(it)
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@ import androidx.work.Data
import ca.uhn.fhir.context.FhirContext
import ca.uhn.fhir.context.FhirVersionEnum
import ca.uhn.fhir.parser.IParser
import com.google.android.fhir.CrudFhirEngine
import com.google.android.fhir.FhirEngine
import com.google.android.fhir.LocalChange
import com.google.android.fhir.LocalChangeToken
Expand Down Expand Up @@ -176,6 +177,8 @@ internal object TestFhirEngineImpl : FhirEngine {
download().collect()
}

override suspend fun withTransaction(block: suspend CrudFhirEngine.() -> Unit) {}

override suspend fun count(search: Search): Long {
return 0
}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@ import com.google.android.fhir.FhirServices.Companion.builder
import com.google.android.fhir.LocalChange
import com.google.android.fhir.LocalChange.Type
import com.google.android.fhir.db.ResourceNotFoundException
import com.google.android.fhir.delete
import com.google.android.fhir.get
import com.google.android.fhir.lastUpdated
import com.google.android.fhir.logicalId
Expand Down Expand Up @@ -783,6 +784,87 @@ class FhirEngineImplTest {
assertThat(services.database.getLocalChangesCount()).isEqualTo(0)
}

@Test
fun `withTransaction saves all changes successfully in order`() = runTest {
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val patient01ID = "patient-01"
val patient01 =
Patient().apply {
id = patient01ID
gender = Enumerations.AdministrativeGender.FEMALE
}
val patient02ID = "patient-02"
val patient02 =
Patient().apply {
id = patient02ID
gender = Enumerations.AdministrativeGender.MALE
}
val patient03ID = "patient-03"
val patient03 =
Patient().apply {
id = patient03ID
gender = Enumerations.AdministrativeGender.FEMALE
}

fhirEngine.create(patient01)
assertThat(fhirEngine.get<Patient>(patient01ID).gender)
.isEqualTo(Enumerations.AdministrativeGender.FEMALE)
fhirEngine.withTransaction {
fhirEngine.create(patient02, patient03)
patient01.gender = Enumerations.AdministrativeGender.FEMALE
fhirEngine.update(patient01)
fhirEngine.delete<Patient>(patient01ID)
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}
assertResourceEquals(patient02, fhirEngine.get<Patient>(patient02ID))
assertResourceEquals(patient03, fhirEngine.get<Patient>(patient03ID))
assertThrows(ResourceNotFoundException::class.java) {
runBlocking { fhirEngine.get<Patient>(patient01ID) }
}
}

@Test
fun `withTransaction reverts all changes when an error occurs`() = runTest {
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val patient01ID = "patient-01"
val patient01 =
Patient().apply {
id = patient01ID
gender = Enumerations.AdministrativeGender.FEMALE
}
val patient02ID = "patient-02"
val patient02 =
Patient().apply {
id = patient02ID
gender = Enumerations.AdministrativeGender.MALE
}
val patient03ID = "patient-03"
val patient03 =
Patient().apply {
id = patient03ID
gender = Enumerations.AdministrativeGender.FEMALE
}
val patient03Updated =
patient03.copy().apply { gender = Enumerations.AdministrativeGender.MALE }

fhirEngine.create(patient03)
try {
fhirEngine.withTransaction {
this.create(patient01)
this.create(patient02)
this.update(patient03Updated)
this.get(ResourceType.Patient, "non_existent_patient_id")
as Patient // Force ResourceNotFoundException
}
} catch (_: ResourceNotFoundException) {}

assertThrows(ResourceNotFoundException::class.java) {
runBlocking { fhirEngine.get<Patient>(patient01ID) }
}
assertThrows(ResourceNotFoundException::class.java) {
runBlocking { fhirEngine.get<Patient>(patient02ID) }
}
assertResourceEquals(patient03, fhirEngine.get<Patient>(patient03ID))
assertResourceNotEquals(patient03Updated, fhirEngine.get<Patient>(patient03ID))
}

companion object {
private const val TEST_PATIENT_1_ID = "test_patient_1"
private var TEST_PATIENT_1 =
Expand Down
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