Create a symlink of the database to the job working directory

Ensure that the _taxonomy file is not written to the test data section Co-authored-by: M Bernt <[email protected]>
galaxyproject · Nov 20, 2024 · 072fc28 · 072fc28
1 parent c729ba6
commit 072fc28
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/tools/mmseqs2/mmseqs2_taxonomy_assignment.xml b/tools/mmseqs2/mmseqs2_taxonomy_assignment.xml
@@ -17,8 +17,9 @@ mmseqs createdb
     --shuffle $createdb.shuffle &&
 ls -lah &&
 ls -lah '$createtaxdb.database_type.mmseqs2_db_select.fields.path'* &&
+ln -s  '$createtaxdb.database_type.mmseqs2_db_select.fields.path' taxdb &&
 mmseqs createtaxdb
-    '$createtaxdb.database_type.mmseqs2_db_select.fields.path'
+    'taxdb'
     'tmp'
     #if '$createtaxdb.tax_mapping_file'
     --tax-mapping-file '$createtaxdb.tax_mapping_file'