try to chmod Swiss-Prot_taxonomy because error could not open for wri…

…ting
galaxyproject · Nov 19, 2024 · c729ba6 · c729ba6
1 parent 220cd5a
commit c729ba6
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/tools/mmseqs2/mmseqs2_taxonomy_assignment.xml b/tools/mmseqs2/mmseqs2_taxonomy_assignment.xml
@@ -15,7 +15,8 @@ mmseqs createdb
     'sequenceDB'
     --dbtype '$createdb.dbtype'
     --shuffle $createdb.shuffle &&
-
+ls -lah &&
+ls -lah '$createtaxdb.database_type.mmseqs2_db_select.fields.path'* &&
 mmseqs createtaxdb
     '$createtaxdb.database_type.mmseqs2_db_select.fields.path'
     'tmp'
@@ -32,6 +33,9 @@ mmseqs createtaxdb
                 --taxon-list '$filtertaxseqdb.filtertaxseqdb_bool.use_filter.taxon_list' &&
             #end if
     #end if
+chmod -Rv 766 '$createtaxdb.database_type.mmseqs2_db_select.fields.path'_taxonomy &&
+ls -lah &&
+ls -lah '$createtaxdb.database_type.mmseqs2_db_select.fields.path'* &&
 mmseqs taxonomy
     #if str($filtertaxseqdb.filtertaxseqdb_bool.use_filter) == "yes"
         'sequenceDB_filtered'