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Replace History Dataset Picker in Library Folder #18518

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ceb40a2
🛠️: refactor `SelectionDialog/selectionTypes.ts` to use TypeScript li…
itisAliRH Jul 9, 2024
5101d0f
✨: add `FilterMenu`, folderIcon and `okButtonText` and `searchTitle` …
itisAliRH Jul 9, 2024
504ccbb
✨: create `api/folders` with `postFolderContent` endpoint
itisAliRH Jul 9, 2024
ef6c289
🎉: create `HistoryDatasetPicker` in Library
itisAliRH Jul 9, 2024
57f43c7
🎨: use `HistoryDatasetPicker` in `FolderTopBar`
itisAliRH Jul 9, 2024
d6eba5a
✨: add and expose `resetPagination` method to `SelectDialog`
itisAliRH Jul 19, 2024
a950dd7
🐛: fix reactivity issue when selecting an item in `HistoryDatasetPicker`
itisAliRH Jul 19, 2024
2684bf7
🐛: fix filter and pagination issues in `HistoryDatasetPicker`
itisAliRH Jul 19, 2024
e951cdd
✨: add and expose `resetFilter` method to `SelectDialog`
itisAliRH Jul 24, 2024
669a695
🐛: fix filter reset issue in `HistoryDatasetPicker`
itisAliRH Jul 24, 2024
ae1169c
🛠️: update `navigation.yml` selectors for `HistoryDatasetPicker`
itisAliRH Jul 24, 2024
03f50f5
🛠️: add `libraries_dataset_import_from_history_search_for` in `naviga…
itisAliRH Jul 24, 2024
9fd716f
🛠️: update `test_library_contents` to work with `HistoryDatasetPicker`
itisAliRH Jul 24, 2024
be37798
🎨: add submitting state and success toast to `HistoryDatasetPicker`
itisAliRH Jul 24, 2024
45205f5
🛠️: update `FolderTopBar` to use `useConfig` composable
itisAliRH Jul 25, 2024
5aac94b
🐛: reset filter in HistoryDatasetPicker on onUndo
itisAliRH Jul 25, 2024
617c3b6
✨: add `total_matches` to GET "/api/datasets"
itisAliRH Jul 25, 2024
6859769
🛠️: update `getDatasets` to return `total_matches` and update the usa…
itisAliRH Jul 25, 2024
489af10
🛠️: import missing types in `HistoryDatasetPicker`
itisAliRH Jul 26, 2024
73c1f49
🔥: remove `addFilesFromHistoryModal` and related methods from `add-da…
itisAliRH Jul 29, 2024
a394944
🛠️: refactor `HistoryDatasetPicker` to use `GalaxyApi` for fetching h…
itisAliRH Sep 11, 2024
cd702b8
🔥: drop `api/folders` file
itisAliRH Sep 11, 2024
4b9c768
🛠️: refactor use const assertion for `SELECTION_STATES`
itisAliRH Sep 13, 2024
e5738fa
🛠️: use `IconDefinition` for `folderIcon` in SelectionDialog`
itisAliRH Sep 13, 2024
86c2be2
🎨: fix no items condition in `SelectionDialog`
itisAliRH Sep 13, 2024
561a635
✨: add `HistorySortByLiteral` type definition to `api/index`
itisAliRH Sep 13, 2024
afa9cf9
🛠️: refactor sorting in history grids and `HistoryDatasetPicker` to u…
itisAliRH Sep 13, 2024
bce8051
🐛: fix `datasetsProvider` sorting and filtering in `HistoryDatasetPic…
itisAliRH Sep 13, 2024
224bf2e
🛠️: refactor FontAwesome icon import in `HistoryDatasetPicker`
itisAliRH Sep 13, 2024
22fb14d
✨: adding progress bar on import datasets from history and make `His…
itisAliRH Sep 13, 2024
3125bba
✨: add customizable title and action button text to `HistoryDatasetP…
itisAliRH Sep 13, 2024
b728a49
🚚: moved `HistoryDatasetPicker` from the `libraries` to the `Selectio…
itisAliRH Sep 13, 2024
4b36af5
🎨: changing progress bar in `FolderTopBar` to be dismissible only wh…
itisAliRH Sep 13, 2024
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6 changes: 3 additions & 3 deletions client/src/components/FilesDialog/FilesDialog.test.ts
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ import flushPromises from "flush-promises";
import { getLocalVue } from "tests/jest/helpers";

import { useServerMock } from "@/api/client/__mocks__";
import { SELECTION_STATES, type SelectionItem } from "@/components/SelectionDialog/selectionTypes";
import { SELECTION_STATES, type SelectionItem, type SelectionState } from "@/components/SelectionDialog/selectionTypes";

/**
* The following imports mock a remote file resource directory structure,
Expand Down Expand Up @@ -57,7 +57,7 @@ jest.mock("@/composables/config", () => ({
const { server, http } = useServerMock();

interface RowElement extends SelectionItem, Element {
_rowVariant: string;
_rowVariant: SelectionState;
}

function paramsToKey(query: { target?: string | null; recursive?: string | null; writeable?: string | null }): string {
Expand Down Expand Up @@ -392,7 +392,7 @@ class Utils {
}

expectSelectAllIconStatusToBe(status: string) {
expect(this.getSelectionDialog().props("selectAllIcon")).toBe(status);
expect(this.getSelectionDialog().props("selectAllVariant")).toBe(status);
}

expectNoErrorMessage() {
Expand Down
5 changes: 3 additions & 2 deletions client/src/components/FilesDialog/FilesDialog.vue
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ import {
type ItemsProviderContext,
SELECTION_STATES,
type SelectionItem,
type SelectionState,
} from "@/components/SelectionDialog/selectionTypes";
import { useConfig } from "@/composables/config";
import { useFileSources } from "@/composables/fileSources";
Expand Down Expand Up @@ -73,7 +74,7 @@ const showDetails = ref(true);
const isBusy = ref(false);
const currentDirectory = ref<SelectionItem>();
const showFTPHelper = ref(false);
const selectAllIcon = ref(SELECTION_STATES.UNSELECTED);
const selectAllIcon = ref<SelectionState>(SELECTION_STATES.UNSELECTED);
const urlTracker = ref(new UrlTracker(""));
const totalItems = ref(0);
Expand Down Expand Up @@ -415,7 +416,7 @@ onMounted(() => {
:modal-static="modalStatic"
:multiple="multiple"
:options-show="optionsShow"
:select-all-icon="selectAllIcon"
:select-all-variant="selectAllIcon"
:show-select-icon="undoShow && multiple"
:undo-show="undoShow"
@onCancel="() => (modalShow = false)"
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -4,15 +4,15 @@ import { faBook, faCaretDown, faDownload, faHome, faPlus, faTrash } from "@forta
import { FontAwesomeIcon } from "@fortawesome/vue-fontawesome";
import { BButton, BDropdown, BDropdownDivider, BDropdownGroup, BDropdownItem, BFormCheckbox } from "bootstrap-vue";
import { storeToRefs } from "pinia";
import { computed, onMounted, ref } from "vue";
import { computed, ref } from "vue";

import { getGalaxyInstance } from "@/app";
import { Services } from "@/components/Libraries/LibraryFolder/services";
import mod_add_datasets from "@/components/Libraries/LibraryFolder/TopToolbar/add-datasets";
import { deleteSelectedItems } from "@/components/Libraries/LibraryFolder/TopToolbar/delete-selected";
import download from "@/components/Libraries/LibraryFolder/TopToolbar/download";
import mod_import_collection from "@/components/Libraries/LibraryFolder/TopToolbar/import-to-history/import-collection";
import mod_import_dataset from "@/components/Libraries/LibraryFolder/TopToolbar/import-to-history/import-dataset";
import { useConfig } from "@/composables/config";
import { type DetailedDatatypes, useDetailedDatatypes } from "@/composables/datatypes";
import { Toast } from "@/composables/toast";
import { useDbKeyStore } from "@/stores/dbKeyStore";
Expand All @@ -21,6 +21,7 @@ import { useUserStore } from "@/stores/userStore";
import FolderDetails from "@/components/Libraries/LibraryFolder/FolderDetails/FolderDetails.vue";
import LibraryBreadcrumb from "@/components/Libraries/LibraryFolder/LibraryBreadcrumb.vue";
import SearchField from "@/components/Libraries/LibraryFolder/SearchField.vue";
import HistoryDatasetPicker from "@/components/Libraries/LibraryFolder/TopToolbar/HistoryDatasetPicker.vue";

library.add(faBook, faCaretDown, faDownload, faHome, faPlus, faTrash);

Expand Down Expand Up @@ -51,18 +52,18 @@ const emit = defineEmits<{
(e: "update:includeDeleted", value: boolean): void;
}>();

const { config, isConfigLoaded } = useConfig();

const userStore = useUserStore();
const { isAdmin } = storeToRefs(userStore);

const { datatypes } = useDetailedDatatypes();

const dbKeyStore = useDbKeyStore();

const libraryImportDir = ref(false);
const allowLibraryPathPaste = ref(false);
const modalShow = ref("");
const genomesList = ref<GenomesList>([]);
const extensionsList = ref<DetailedDatatypes[]>([]);
const userLibraryImportDirAvailable = ref(false);
const auto = ref({
id: "auto",
extension: "auto",
Expand All @@ -76,18 +77,19 @@ const auto = ref({
description_url: "",
});

const Galaxy = getGalaxyInstance();

const services = new Services();

const libraryImportDir = computed(() => isConfigLoaded && config.value?.library_import_dir);
const allowLibraryPathPaste = computed(() => isConfigLoaded && config.value?.allow_library_path_paste);
const userLibraryImportDirAvailable = computed(() => isConfigLoaded && config.value?.user_library_import_dir_available);
const containsFileOrFolder = computed(() => {
return props.folderContents.find((el) => el.type === "folder" || el.type === "file");
});
const canDelete = computed(() => {
return !!(containsFileOrFolder.value && isAdmin.value);
});
const datasetManipulation = computed(() => {
return !!(containsFileOrFolder.value && Galaxy.user);
return !!(containsFileOrFolder.value && userStore.currentUser);
});
const totalRows = computed(() => {
return props.metadata?.total_rows ?? 0;
Expand Down Expand Up @@ -201,6 +203,10 @@ async function importToHistoryModal(isCollection: boolean) {
}
}

function onAddDatasets(source: string = "") {
modalShow.value = source;
}

// TODO: after replacing the selection dialog with the new component that is not using jquery
async function addDatasets(source: string) {
await fetchExtAndGenomes();
Expand Down Expand Up @@ -240,12 +246,6 @@ async function fetchExtAndGenomes() {
console.error(err);
}
}

onMounted(async () => {
libraryImportDir.value = Galaxy.config.library_import_dir;
allowLibraryPathPaste.value = Galaxy.config.allow_library_path_paste;
userLibraryImportDirAvailable.value = Galaxy.config.user_library_import_dir_available;
});
</script>

<template>
Expand Down Expand Up @@ -285,7 +285,7 @@ onMounted(async () => {
<FontAwesomeIcon :icon="faCaretDown" />
</template>

<BDropdownItem @click="addDatasets('history')"> from History </BDropdownItem>
<BDropdownItem @click="onAddDatasets('history')"> from History </BDropdownItem>

<BDropdownItem v-if="userLibraryImportDirAvailable" @click="addDatasets('userdir')">
from User Directory
Expand Down Expand Up @@ -356,5 +356,11 @@ onMounted(async () => {
v-if="props.metadata && props.metadata.full_path"
:full_path="props.metadata.full_path"
:current-id="props.folderId" />

<HistoryDatasetPicker
v-if="modalShow === 'history'"
:folder-id="props.folderId"
@onClose="onAddDatasets"
@reload="emit('fetchFolderContents')" />
</div>
</template>
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