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More typing, docs, and decomposition around tool execution #32999

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Run time

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Job	Run time
Test (3.8, v1, galaxy_api)	21m 12s
Test (3.8, v1, standalone)	23m 4s
Test (3.8, v2, galaxy_api)	25m 11s
Test (3.8, v2, standalone)	25m 50s
Test (3.12, v1, galaxy_api)	20m 44s
Test (3.12, v1, standalone)	20m 14s
Test (3.12, v2, galaxy_api)	23m 17s
Test (3.12, v2, standalone)	25m 16s
	3h 4m 48s