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add features from cellmap fork#29

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d-v-b wants to merge 49 commits intofunkelab:masterfunkelab/dacapo:masterfrom janelia-cellmap:mainjanelia-cellmap/dacapo:mainCopy head branch name to clipboard

+209-140

Commits

Commits on Aug 30, 2023

• fix distance mask predictor

  mzouink

  committed
  eb1309c

Commits on Jan 16, 2024

• Update black.yaml - force formatting

  rhoadesScholar

  authored
  5fe699a

• Update black.yaml - automatic black

  rhoadesScholar

  authored
  0098fa2

• Update black.yaml - remove auto black

  rhoadesScholar

  authored
  13ae1f0

Commits on Feb 7, 2024

• Update black.yaml

  mzouink

  authored
  d741626

• remove black

  mzouink

  authored
  9351c16

• add black format check

  mzouink

  authored
  bb8cab5

• black format on pull request

  mzouink

  authored
  c25cb79

• 🎨 Format Python code with psf/black

  mzouink

  authored
  08f134d

• Merge pull request #19 from janelia-cellmap/actions/black

  Show description for e73afa2
  mzouink

  authored
  e73afa2

• bug fixes and better logs

  mzouink

  committed
  ff61f7c

• Update train.py

  mzouink

  authored
  1490440

• Update train.py

  mzouink

  authored
  3c5f2da

• Merge pull request #20 from janelia-cellmap/zouinkhim_fixes

  Show description for 34e8253
  rhoadesScholar

  authored
  34e8253

Commits on Feb 8, 2024

• feat: 🚧 Incorporate simple change from rhoadesj/dev

  rhoadesScholar

  committed
  33bbc8a

• feat: 🚧 Incorporate simple change from rhoadesj/dev

  rhoadesScholar

  committed
  fe23b5d

• Merge pull request #25 from janelia-cellmap/rhoadesj_simple_changes

  Show description for 5f50f9b
  mzouink

  authored
  5f50f9b

• feat: ⚡️ Incorporate start related changes from rhoadesj/dev

  rhoadesScholar

  committed
  812acc1

Commits on Feb 9, 2024

• docs: 📝 Add authors and versioning.

  rhoadesScholar

  committed
  ce5d272

• starter partial weight load

  mzouink

  committed
  4f1dfed

• Merge pull request #35 from janelia-cellmap/fix_start_loader

  Show description for 910b2e0
  mzouink

  authored
  910b2e0

• 🎨 Format Python code with psf/black

  mzouink

  authored
  906dfd6

• Merge pull request #37 from janelia-cellmap/actions/black

  Show description for 8cce986
  mzouink

  authored
  8cce986

• publish to pypi

  mzouink

  committed
  f5e584a

• logo

  rhoadesScholar

  authored
  281a768

• Update README.md

  rhoadesScholar

  authored
  65482f4

• Update README.md

  rhoadesScholar

  authored
  52409f9

• Update publish.yaml

  mzouink

  authored
  b8e18b4

• fix: 🐛 Fix broken dependencies for MacOS.

  rhoadesScholar

  committed
  b4b2780

• include and use more biases during watershed post processing of affinities

  davidackerman

  committed
  55a3892

• include weighting argument for affinities+lsd loss

  davidackerman

  committed
  58c7abe

• make predictor node optional

  davidackerman

  committed
  ce71fb5

• 🎨 Format Python code with psf/black

  davidackerman

  authored
  353b8cb

• Merge pull request #42 from janelia-cellmap/actions/black

  Show description for 4a54e31
  mzouink

  authored
  4a54e31

• styles fixes for mypy

  mzouink

  committed
  f243c7c

• update git action, fix doc and no more publish

  mzouink

  committed
  cebc737

• remove unfinished cli and apply from main

  mzouink

  committed
  7feab6a

• fix test action, pytest 8.0.0 working

  mzouink

  committed
  5d77af0

• 🎨 Format Python code with psf/black

  mzouink

  authored
  e46acf0

• Merge pull request #45 from janelia-cellmap/actions/black

  Show description for cea9c03
  mzouink

  authored
  cea9c03

• 🎨 Format Python code with psf/black

  mzouink

  authored
  232047c

• Merge pull request #46 from janelia-cellmap/actions/black

  Show description for 8b9d44a
  mzouink

  authored
  8b9d44a

• test only with python 3.10

  mzouink

  committed
  62d6278

Commits on Feb 12, 2024

• bug fix: loading starter weight, layer exist but mismatch shape

  mzouink

  committed
  3c2f0fe

• Merge pull request #60 from janelia-cellmap/fix_bug_starter_shape

  Show description for 84436e8
  mzouink

  authored
  84436e8

• update size checking

  mzouink

  committed
  4a4bd94

• 🎨 Format Python code with psf/black

  mzouink

  authored
  5855dd0

• Merge pull request #63 from janelia-cellmap/actions/black

  Show description for 6afcacd
  mzouink

  authored
  6afcacd

• Merge pull request #64 from janelia-cellmap/fix_bug_starter_shape

  Show description for d0512f9
  mzouink

  authored
  d0512f9