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add chunk setup to prevent messages
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avallecam committed Jun 19, 2024
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Expand Up @@ -298,7 +298,7 @@ The final key input is the delay distribution between the primary and secondary
There are further function inputs to `estimate_secondary()` which can be specified, including adding an observation process, see `?EpiNow2::estimate_secondary` for detail on these options.

To find the model fit between cases and deaths:
```{r}
```{r,warning=FALSE,message=FALSE}
# Estimate from day 31 to day 60 of this data
cases_to_estimate <- reported_cases_deaths %>%
slice(31:60)
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