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@epiverse-trace

Epiverse-TRACE

README.md

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  1. epiparameter epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    R 32 11

  2. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 29 3

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 17 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 14 2

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 3

  6. finalsize finalsize Public

    R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

    R 11 7

Repositories

Showing 10 of 58 repositories
  • .github Public
    epiverse-trace/.github’s past year of commit activity
    1 1 4 0 Updated Oct 6, 2024
  • cleanepi Public

    R package to clean and standardize epidemiological data

    epiverse-trace/cleanepi’s past year of commit activity
    R 8 3 28 7 Updated Oct 5, 2024
  • howto Public
    epiverse-trace/howto’s past year of commit activity
    R 1 CC-BY-4.0 2 57 1 Updated Oct 4, 2024
  • serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    epiverse-trace/serofoi’s past year of commit activity
    R 17 4 30 3 Updated Oct 4, 2024
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 5 1 7 0 Updated Oct 4, 2024
  • epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    epiverse-trace/epiparameter’s past year of commit activity
    R 32 11 57 (3 issues need help) 6 Updated Oct 2, 2024
  • datatagr Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/datatagr’s past year of commit activity
    R 1 0 1 3 Updated Oct 2, 2024
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 0 0 Updated Oct 2, 2024
  • packagetemplate Public template

    Template of an R package with standard Epiverse-TRACE automation

    epiverse-trace/packagetemplate’s past year of commit activity
    R 7 4 12 (2 issues need help) 4 Updated Oct 1, 2024
  • epitkit Public
    epiverse-trace/epitkit’s past year of commit activity
    R 0 0 4 0 Updated Oct 1, 2024
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