Add contacts simulation functionality #10
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…arguments to allow flexibility
…l, removed arg default as internal
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Closing and reopening PR to trigger required organisation workflows. |
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This PR adds a new exported function
sim_contacts(), which produces a table of contacts for an infectious disease outbreak. Internally, this function has a lot of overlap withsim_linelist()and uses the internal functionality of other {simulist} functions..create_contacts()is also added as the internal function that produces the contacts table.sim_linelist()is updated to remove the previously WIP option to include contacts in the output of that function, and theinclude_contactsargument has now been removed from the function (as has the test that checked this).Tests for
sim_contacts()have been added.