Merge branch 'main' into unexport-funcs

.github/workflows/R-CMD-check.yaml

@@ -61,7 +61,7 @@ jobs:
  _R_CHECK_LENGTH_COLON_: true
 
  steps:
- - uses: actions/checkout@v3
+ - uses: actions/checkout@v4
 
  - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/lint-changed-files.yaml

@@ -17,7 +17,7 @@ jobs:
  env:
  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
  steps:
- - uses: actions/checkout@v3
+ - uses: actions/checkout@v4
 
  - uses: r-lib/actions/setup-r@v2
  with:

.github/workflows/pkgdown.yaml

@@ -52,7 +52,7 @@ jobs:
  permissions:
  contents: write
  steps:
- - uses: actions/checkout@v3
+ - uses: actions/checkout@v4
 
  - uses: r-lib/actions/setup-pandoc@v2
 
@@ -71,7 +71,7 @@ jobs:
 
  - name: Deploy to GitHub pages 🚀
  if: github.event_name != 'pull_request'
- uses: JamesIves/github-pages-deploy-action@4.1.4
+ uses: JamesIves/github-pages-deploy-action@v4.5.0
  with:
  # We clean on releases because we want to remove old vignettes,
  # figures, etc. that have been deleted from the `main` branch.

.github/workflows/test-coverage.yaml

@@ -33,7 +33,7 @@ jobs:
  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
  steps:
- - uses: actions/checkout@v3
+ - uses: actions/checkout@v4
 
  - uses: r-lib/actions/setup-r@v2
  with:

.github/workflows/update-citation-cff.yaml

@@ -22,7 +22,7 @@ jobs:
  env:
  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
  steps:
- - uses: actions/checkout@v3
+ - uses: actions/checkout@v4
  - uses: r-lib/actions/setup-r@v2
  - uses: r-lib/actions/setup-r-dependencies@v2
  with:

CITATION.cff

@@ -1,5 +1,5 @@
 # -----------------------------------------------------------
-# CITATION file created with {cffr} R package, v0.5.0
+# CITATION file created with {cffr} R package, v1.0.0
 # See also: https://docs.ropensci.org/cffr/
 # -----------------------------------------------------------
 
@@ -13,7 +13,7 @@ version: 0.0.0.9999
 abstract: Provides methods to simulate and analyse the size and length of branching
  processes with an arbitrary offspring distribution. These can be used, for example,
  to analyse the distribution of chain sizes or length of infectious disease outbreaks,
- as discussed in Farrington et al. (2003) <doi:10.1093/biostatistics/4.2.279>.
+ as discussed in Farrington et al. (2003) <https://doi.org/10.1093/biostatistics/4.2.279>.
 authors:
 - family-names: Azam
  given-names: James M.
@@ -53,11 +53,10 @@ references:
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
- location:
- name: Vienna, Austria
- year: '2024'
  institution:
  name: R Foundation for Statistical Computing
+ address: Vienna, Austria
+ year: '2024'
  version: '>= 3.6.0'
 - type: software
  title: checkmate
@@ -77,22 +76,20 @@ references:
  notes: Imports
  authors:
  - name: R Core Team
- location:
- name: Vienna, Austria
- year: '2024'
  institution:
  name: R Foundation for Statistical Computing
+ address: Vienna, Austria
+ year: '2024'
 - type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
- location:
- name: Vienna, Austria
- year: '2024'
  institution:
  name: R Foundation for Statistical Computing
+ address: Vienna, Austria
+ year: '2024'
 - type: software
  title: bookdown
  abstract: 'bookdown: Authoring Books and Technical Documents with R Markdown'
@@ -163,6 +160,10 @@ references:
  - family-names: Dunnington
  given-names: Dewey
  orcid: https://orcid.org/0000-0002-9415-4582
+ - family-names: Brand
+ given-names: Teun
+ name-particle: van den
+ orcid: https://orcid.org/0000-0002-9335-7468
  year: '2024'
 - type: software
  title: knitr
@@ -238,7 +239,7 @@ references:
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
- url: https://docs.ropensci.org/spelling/
+ url: https://ropensci.r-universe.dev/spelling
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms