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The miniasm process requesting too little memory in some cases.
Spurious out-of-memory errors for the SPOA process.
Variant calling mode with --combine_results failing with a single sample/barcode.
Changed
When there is at least one amplicon depth plot that shows more than one sample, the depth plots now use consistent colours for individual samples across the different amplicons.
The workflow now uses the fastcat read length and quality histograms instead of the per-read stats in the report process.
Added
IGV config json file to the outputs (in order to visualise the alignments and called variants).