Merge pull request #100 from eastgenomics/DI-143_cnvreports_path

correct cnvrpt_workflow_out_dir (#100)
eastgenomics · May 12, 2023 · e6345c4 · e6345c4
2 parents 19deb23 + 69a74e5
commit e6345c4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/cnvreports.py b/cnvreports.py
@@ -173,7 +173,7 @@ def run_cnvreports(
  "panels": panels
  }
  # Upload manifest file
- cmd = "dx upload {} --path {}".format(sample_ID_TestCode, rpt_workflow_out_dir)
+ cmd = "dx upload {} --path {}".format(sample_ID_TestCode, cnvrpt_workflow_out_dir)
  subprocess.check_output(cmd, shell=True)
 
  elif sample_X_CI is not None:
@@ -235,7 +235,7 @@ def run_cnvreports(
  "panels": panels
  }
  # Upload manifest file
- cmd = "dx upload {} --path {}".format(sample_X_CI, rpt_workflow_out_dir)
+ cmd = "dx upload {} --path {}".format(sample_X_CI, cnvrpt_workflow_out_dir)
  subprocess.check_output(cmd, shell=True)
 
  else: