Merge pull request #164 from eastgenomics/v3.0.0-the_great_refactor

v3.0.0 -> master
eastgenomics · Dec 19, 2023 · b2da2b3 · b2da2b3
2 parents a94521c + 322548e
commit b2da2b3
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diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -0,0 +1,21 @@
+name: pytest
+on: [pull_request]
+
+jobs:
+ build:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v2
+ - name: Set up Python 3.8
+ uses: actions/setup-python@v1
+ with:
+ python-version: 3.8
+ - name: Install dependencies
+ run: |
+ python -m pip install --upgrade pip
+ pip install pipenv codecov
+ pip install -r requirements.txt
+ pipenv install --dev
+ - name: Test with pytest
+ run: |
+ pytest -vv --cov resources/home/dnanexus/dias_batch/
diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,6 @@
+archive/*
+test.py
 *.pyc
-*.tsv
-*.json
+/*.tsv
+*.coverage
+htmlcov/*
diff --git a/READme.md b/READme.md
diff --git a/cnvcalling.py b/cnvcalling.py