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Update README.md
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adigenova authored Sep 14, 2022
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## Usage ##

`nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results`
`nextflow run digenoma-lab/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results`

To run the pipeline with docker or conda instead of singularity, just replace "-profile singularity" with "-profile docker" or "-profile conda", respectively. To run with your own local installation of softwares, just remove "-profile singularity"

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| multiqc_fastqc_report.html | multiQC report for fastQC |
| multiqc_fastqc_report_data | data used for the multiQC report HTMLs |

## Contributions


## Former developpers
| Name | Email | Description |
|-----------|---------------|-----------------|
| Nicolas Alcala* | [email protected] | Developer to contact for support |
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