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## Usage ## | ||
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`nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results` | ||
`nextflow run digenoma-lab/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results` | ||
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To run the pipeline with docker or conda instead of singularity, just replace "-profile singularity" with "-profile docker" or "-profile conda", respectively. To run with your own local installation of softwares, just remove "-profile singularity" | ||
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| multiqc_fastqc_report.html | multiQC report for fastQC | | ||
| multiqc_fastqc_report_data | data used for the multiQC report HTMLs | | ||
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## Contributions | ||
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## Former developpers | ||
| Name | Email | Description | | ||
|-----------|---------------|-----------------| | ||
| Nicolas Alcala* | [email protected] | Developer to contact for support | | ||
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