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Update README.md
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@nalcala
nalcala authored Nov 24, 2020
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Expand Up @@ -53,7 +53,7 @@ Flags are special parameters without value.

`nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results`

To run the pipeline without singularity just remove "-profile singularity"
To run the pipeline with docker or conda instead of singularity, just replace "-profile singularity" with "-profile docker" or "-profile conda", respectively. To run with your own local installation of softwares, just remove "-profile singularity"

## Output ##

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