gimmebio

Utilities and explorations in computational Biology. MIT License.

Packages

• Kmers, make kmers of many different styles.
• Linked Reads, utilities for handling linked read data
• Seqs, general utilites for handling sequence data. Some IO which should be deprecated
• Bayesian First Aid, incomplete python implementation of bfa
• Hiveplots, python implemnetation of hiveplots with area hiveplots
• operonator, experiment using linked reads to detect gene clusters
• ponce_de_leon, experiment using Approx Bayesian Computation to bridge low complexity regiosn
• ram_seq, use Ramanujan-Fourier transform to process sequence data
• seqtalk, experiment with neural nets for sequence processing
• taxa_ags_normalizer, estimate average genome size for taxa

Installation

Install from PyPi.

pip install gimmebio

Install from source.

git clone [email protected]:dcdanko/gimmebio.git
cd gimmebio
python setup.py install

Credits

This package is structured as a set of microlibraries

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

gimmebio was written by David C. Danko.