Utilities and explorations in computational Biology. MIT License.
- Kmers, make kmers of many different styles.
- Linked Reads, utilities for handling linked read data
- Seqs, general utilites for handling sequence data. Some IO which should be deprecated
- Bayesian First Aid, incomplete python implementation of bfa
- Hiveplots, python implemnetation of hiveplots with area hiveplots
- operonator, experiment using linked reads to detect gene clusters
- ponce_de_leon, experiment using Approx Bayesian Computation to bridge low complexity regiosn
- ram_seq, use Ramanujan-Fourier transform to process sequence data
- seqtalk, experiment with neural nets for sequence processing
- taxa_ags_normalizer, estimate average genome size for taxa
Install from PyPi.
pip install gimmebioInstall from source.
git clone [email protected]:dcdanko/gimmebio.git
cd gimmebio
python setup.py installThis package is structured as a set of microlibraries
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
gimmebio was written by David C. Danko.