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52 Open 71 Closed
52 Open 71 Closed
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Issues list

Using -p unnecessarily in all the mkdirs
#261 opened Aug 8, 2024 by sstevens2
02-quality-control: clarification for transfer data from AWS to local desktop
#258 opened Jun 19, 2024 by youyaqi
02-quality-control: clarification for paired-end data
#257 opened Jun 19, 2024 by youyaqi
Variant Calling testing cmds should match script
#247 opened Aug 17, 2023 by sstevens2
Update software versions
#246 opened Jul 23, 2023 by bkmgit
Links need to be fixed in CONTRIBUTING.md
#243 opened Jun 2, 2023 by tobyhodges
Grammatical / typo errors in Trimming and Filtering
#237 opened Dec 13, 2022 by anniewest
Add alt text for images included in the lesson for improved accessibility
#236 opened Dec 7, 2022 by mellamosummer
Consider updating the trimming tool to something a bit friendlier
#232 opened Jun 24, 2022 by JCSzamosi
4
Need jump lists (anchors) for headings
#230 opened Jan 20, 2022 by annajiat
Lesson Contribution: Assessing Read Quality
#224 opened Jul 21, 2021 by Talishask
1
Where does the build recipe for the 'dataCgen-qc' AMI live?
#221 opened Jun 3, 2021 by willfurnass
Assessing Read Quality: Improve the visualisation of Phred Quality Scores
#220 opened Apr 16, 2021 by theheking
1
Adapt trimmomatic command
#219 opened Mar 25, 2021 by larahurban
Use of SRA Explorer to Download FastQC Files ?
#217 opened Nov 3, 2020 by jcjimbo
Add the use of MultiQC to combine fastqc file in section 02-quality-control
#213 opened Jun 26, 2020 by ggrimes
Variant Calling Workflow: example has incorrect samtool sort options and param
#211 opened Mar 5, 2020 by msuhovec
1
AWS AMI missing fastqc and related tools
#209 opened Jan 28, 2020 by tejashree1modak
1
SRR2584866_final_variants.vcf is missing "results" data
#200 opened Nov 12, 2019 by hoytpr
Use of touch in "Automating a Variant Calling Workflow" lesson in Data Wrangling and Processing for Genomics
#197 opened Oct 23, 2019 by cpaisie
Wording of aligner choice in lesson 04-variant_calling
#189 opened Sep 15, 2019 by JanaSperschneider
1
I have a problem with executing variant call
#188 opened Sep 14, 2019 by otienolwanga
7
wrangling-genomics/01-background: lack of clarity in "View the Metadata" section (omission)
#182 opened Jun 24, 2019 by ousodaniel
wrangling-genomics/02-quality-control: scp command needs clarity
#180 opened Jun 12, 2019 by hoytpr
Shell scripting not effectively handled
#174 opened Jun 1, 2019 by sstevens2
4
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