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02-quality-control: clarification for paired-end data #257

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youyaqi opened this issue Jun 19, 2024 · 0 comments
Open

02-quality-control: clarification for paired-end data #257

youyaqi opened this issue Jun 19, 2024 · 0 comments

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@youyaqi
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youyaqi commented Jun 19, 2024

How could the content be improved?

The data are paired-end, so we will download two files for each sample (forward reads in xxx_1.fastq.gz and reverse reads in xxx_2.fastq.gz). We will use the European Nucleotide Archive to get our data. The ENA “provides a comprehensive record of the world’s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation.” The ENA also provides sequencing data in the fastq format, an important format for sequencing reads that we will be learning about today.

Which part of the content does your suggestion apply to?

https://datacarpentry.org/wrangling-genomics/02-quality-control.html#starting-with-data

@youyaqi youyaqi changed the title 02-quality-control: clarification about paired-end data 02-quality-control: clarification for paired-end data Jun 19, 2024
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