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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname HypergeoMat | ||
| %global packver 4.0.3 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 4.0.3 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Hypergeometric Function of a Matrix Argument | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.2 | ||
| BuildRequires: R-CRAN-EigenR | ||
| BuildRequires: R-CRAN-gsl | ||
| BuildRequires: R-CRAN-JuliaConnectoR | ||
| BuildRequires: R-CRAN-RcppEigen | ||
| Requires: R-CRAN-Rcpp >= 1.0.2 | ||
| Requires: R-CRAN-EigenR | ||
| Requires: R-CRAN-gsl | ||
| Requires: R-CRAN-JuliaConnectoR | ||
|
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| %description | ||
| Evaluates the hypergeometric functions of a matrix argument, which appear | ||
| in random matrix theory. This is an implementation of Koev & Edelman's | ||
| algorithm (2006) <doi:10.1090/S0025-5718-06-01824-2>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,61 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname IDSpatialStats | ||
| %global packver 0.4.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.4.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Estimate Global Clustering in Infectious Disease | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildRequires: R-CRAN-doParallel | ||
| BuildRequires: R-CRAN-foreach | ||
| BuildRequires: R-parallel | ||
| BuildRequires: R-CRAN-igraph | ||
| BuildRequires: R-CRAN-spatstat.explore | ||
| BuildRequires: R-CRAN-spatstat.geom | ||
| Requires: R-CRAN-doParallel | ||
| Requires: R-CRAN-foreach | ||
| Requires: R-parallel | ||
| Requires: R-CRAN-igraph | ||
| Requires: R-CRAN-spatstat.explore | ||
| Requires: R-CRAN-spatstat.geom | ||
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| %description | ||
| Implements various novel and standard clustering statistics and other | ||
| analyses useful for understanding the spread of infectious disease. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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| %build | ||
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| %install | ||
|
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname corrMCT | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Correlated Weighted Hochberg | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-glue | ||
| BuildRequires: R-CRAN-magrittr | ||
| BuildRequires: R-CRAN-Matrix | ||
| BuildRequires: R-CRAN-tibble | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-glue | ||
| Requires: R-CRAN-magrittr | ||
| Requires: R-CRAN-Matrix | ||
| Requires: R-CRAN-tibble | ||
|
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| %description | ||
| Perform additional multiple testing procedure methods to p.adjust(), such | ||
| as weighted Hochberg (Tamhane, A. C., & Liu, L., 2008) | ||
| <doi:10.1093/biomet/asn018>, ICC adjusted Bonferroni method (Shi, Q., | ||
| Pavey, E. S., & Carter, R. E., 2012) <doi:10.1002/pst.1514> and a new | ||
| correlation corrected weighted Hochberg for correlated endpoints. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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