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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname ATQ | ||
| %global packver 0.2.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.2.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Alert Time Quality - Evaluating Timely Epidemic Metrics | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-zoo | ||
| BuildRequires: R-CRAN-ggplot2 | ||
| BuildRequires: R-CRAN-gridExtra | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-scales | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-zoo | ||
| Requires: R-CRAN-ggplot2 | ||
| Requires: R-CRAN-gridExtra | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-scales | ||
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| %description | ||
| Provides tools for evaluating timely epidemic detection models within | ||
| school absenteeism-based surveillance systems. Introduces the concept of | ||
| alert time quality as an evaluation metric. Includes functions to simulate | ||
| populations, epidemics, and alert metrics associated with epidemic spread | ||
| using population census data. The methods are based on research published | ||
| in Vanderkruk et al. (2023) <doi:10.1186/s12889-023-15747-z> and Jarvis et | ||
| al. (2019) <doi:10.1186/s12889-019-7521-7>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| @@ -0,0 +1,78 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname BEAMR | ||
| %global packver 1.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Bootstrap Evaluation of Association Matrices | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-ggmosaic | ||
| BuildRequires: R-CRAN-ggplot2 | ||
| BuildRequires: R-CRAN-ggpubr | ||
| BuildRequires: R-CRAN-logistf | ||
| BuildRequires: R-CRAN-magrittr | ||
| BuildRequires: R-CRAN-MASS | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-rlist | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-survival | ||
| BuildRequires: R-CRAN-survminer | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-ggmosaic | ||
| Requires: R-CRAN-ggplot2 | ||
| Requires: R-CRAN-ggpubr | ||
| Requires: R-CRAN-logistf | ||
| Requires: R-CRAN-magrittr | ||
| Requires: R-CRAN-MASS | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-rlist | ||
| Requires: R-stats | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-survival | ||
| Requires: R-CRAN-survminer | ||
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| %description | ||
| A bootstrap-based approach to integrate multiple forms of high dimensional | ||
| genomic data with multiple clinical endpoints. This method is used to | ||
| find clinically meaningful groups of genomic features, such as genes or | ||
| pathways. A manuscript describing this method is in preparation. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| @@ -0,0 +1,51 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname ORIONZ.G | ||
| %global packver 1.0.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: EAP Scoring in Exploratory FA Solutions with Correlated Residuals | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5 | ||
| Requires: R-core >= 3.5 | ||
| BuildArch: noarch | ||
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| %description | ||
| Obtaining Bayes Expected A Posteriori (EAP) individual score estimates | ||
| based on linear and non-linear extended Exploratoy Factor Analysis | ||
| solutions that include a correlated-residual structure. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,73 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname baggingbwsel | ||
| %global packver 1.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Bagging Bandwidth Selection in Kernel Density and Regression Estimation | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.3 | ||
| BuildRequires: R-CRAN-mclust | ||
| BuildRequires: R-CRAN-foreach | ||
| BuildRequires: R-parallel | ||
| BuildRequires: R-CRAN-doParallel | ||
| BuildRequires: R-CRAN-kedd | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-sm | ||
| BuildRequires: R-CRAN-nor1mix | ||
| BuildRequires: R-CRAN-misc3d | ||
| Requires: R-CRAN-Rcpp >= 1.0.3 | ||
| Requires: R-CRAN-mclust | ||
| Requires: R-CRAN-foreach | ||
| Requires: R-parallel | ||
| Requires: R-CRAN-doParallel | ||
| Requires: R-CRAN-kedd | ||
| Requires: R-stats | ||
| Requires: R-CRAN-sm | ||
| Requires: R-CRAN-nor1mix | ||
| Requires: R-CRAN-misc3d | ||
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| %description | ||
| Bagging bandwidth selection methods for the Parzen-Rosenblatt and | ||
| Nadaraya-Watson estimators. These bandwidth selectors can achieve greater | ||
| statistical precision than their non-bagged counterparts while being | ||
| computationally fast. See Barreiro-Ures et al. (2020) | ||
| <doi:10.1093/biomet/asaa092> and Barreiro-Ures et al. (2021) | ||
| <doi:10.48550/arXiv.2105.04134>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname callme | ||
| %global packver 0.1.10 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.10 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Easily Compile and Call Inline C Functions | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-methods | ||
| Requires: R-methods | ||
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| %description | ||
| Compile inline 'C' code and easily call with automatically generated | ||
| wrapper functions. By allowing user-defined headers and compilation flags | ||
| (preprocessor, compiler and linking flags) the user can configure | ||
| optimization options and linking to third party libraries. Multiple | ||
| functions may be defined in a single block of code - which may be defined | ||
| in a string or a path to a source file. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
|
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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