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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname DiscreteFWER | ||
| %global packver 1.0.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: FWER-Based Multiple Testing Procedures with Adaptation for Discrete Tests | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.0 | ||
| Requires: R-core >= 4.0 | ||
| BuildRequires: R-CRAN-DiscreteFDR >= 2.0.0 | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.13 | ||
| BuildRequires: R-CRAN-checkmate | ||
| BuildRequires: R-CRAN-RcppArmadillo | ||
| Requires: R-CRAN-DiscreteFDR >= 2.0.0 | ||
| Requires: R-CRAN-Rcpp >= 1.0.13 | ||
| Requires: R-CRAN-checkmate | ||
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| %description | ||
| Implementations of several multiple testing procedures that control the | ||
| family-wise error rate (FWER) designed specifically for discrete tests. | ||
| Included are discrete adaptations of the Bonferroni, Holm, Hochberg and | ||
| Šidák procedures as described in the papers Döhler (2010) "Validation of | ||
| credit default probabilities using multiple-testing procedures" | ||
| <doi:10.21314/JRMV.2010.062> and Zhu & Guo (2019) "Family-Wise Error Rate | ||
| Controlling Procedures for Discrete Data" | ||
| <doi:10.1080/19466315.2019.1654912>. The main procedures of this package | ||
| take as input the results of a test procedure from package 'DiscreteTests' | ||
| or a set of observed p-values and their discrete support under their | ||
| nulls. A shortcut function to apply discrete procedures directly to data | ||
| is also provided. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,89 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname OmopViewer | ||
| %global packver 0.2.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.2.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Visualise OMOP Results using 'shiny' Applications | ||
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| License: Apache License (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-visOmopResults >= 0.5.0 | ||
| BuildRequires: R-CRAN-omopgenerics >= 0.4.0 | ||
| BuildRequires: R-CRAN-bslib | ||
| BuildRequires: R-CRAN-cli | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-DT | ||
| BuildRequires: R-CRAN-glue | ||
| BuildRequires: R-CRAN-gt | ||
| BuildRequires: R-CRAN-lifecycle | ||
| BuildRequires: R-CRAN-markdown | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-shiny | ||
| BuildRequires: R-CRAN-snakecase | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-styler | ||
| BuildRequires: R-CRAN-tidyr | ||
| BuildRequires: R-CRAN-usethis | ||
| BuildRequires: R-CRAN-yaml | ||
| Requires: R-CRAN-visOmopResults >= 0.5.0 | ||
| Requires: R-CRAN-omopgenerics >= 0.4.0 | ||
| Requires: R-CRAN-bslib | ||
| Requires: R-CRAN-cli | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-DT | ||
| Requires: R-CRAN-glue | ||
| Requires: R-CRAN-gt | ||
| Requires: R-CRAN-lifecycle | ||
| Requires: R-CRAN-markdown | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-shiny | ||
| Requires: R-CRAN-snakecase | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-styler | ||
| Requires: R-CRAN-tidyr | ||
| Requires: R-CRAN-usethis | ||
| Requires: R-CRAN-yaml | ||
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| %description | ||
| Visualise results obtained from analysing data mapped to the Observational | ||
| Medical Outcomes Partnership (OMOP) common data model using 'shiny' | ||
| applications. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
|
||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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