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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname DIRMR | ||
| %global packver 0.5.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.5.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Distributed Imputation for Random Effects Models with Missing Responses | ||
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| License: GPL-2 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-MASS | ||
| BuildRequires: R-CRAN-lava | ||
| BuildRequires: R-CRAN-mvtnorm | ||
| Requires: R-CRAN-MASS | ||
| Requires: R-CRAN-lava | ||
| Requires: R-CRAN-mvtnorm | ||
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| %description | ||
| By adding over-relaxation factor to PXEM (Parameter Expanded Expectation | ||
| Maximization) method, the MOPXEM (Monotonically Overrelaxed Parameter | ||
| Expanded Expectation Maximization) method is obtained. Compare it with the | ||
| existing EM (Expectation-Maximization)-like methods. Then, distribute and | ||
| process five methods and compare them, achieving good performance in | ||
| convergence speed and result quality.The philosophy of the package is | ||
| described in Guo G. (2022) <doi:10.1007/s00180-022-01270-z>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname MultiTraits | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Analyzing and Visualizing Multidimensional Plant Traits | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.0.0 | ||
| Requires: R-core >= 4.0.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-ggplot2 | ||
| BuildRequires: R-CRAN-ggtern | ||
| BuildRequires: R-CRAN-igraph | ||
| BuildRequires: R-CRAN-Hmisc | ||
| BuildRequires: R-CRAN-corrplot | ||
| BuildRequires: R-CRAN-scatterplot3d | ||
| BuildRequires: R-CRAN-vegan | ||
| BuildRequires: R-CRAN-ggrepel | ||
| Requires: R-CRAN-ggplot2 | ||
| Requires: R-CRAN-ggtern | ||
| Requires: R-CRAN-igraph | ||
| Requires: R-CRAN-Hmisc | ||
| Requires: R-CRAN-corrplot | ||
| Requires: R-CRAN-scatterplot3d | ||
| Requires: R-CRAN-vegan | ||
| Requires: R-CRAN-ggrepel | ||
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| %description | ||
| Implements analytical methods for multidimensional plant traits, including | ||
| Competitors-Stress tolerators-Ruderals strategy analysis using leaf | ||
| traits, Leaf-Height-Seed strategy analysis, Niche Periodicity Table | ||
| analysis, and Trait Network analysis. Provides functions for data | ||
| analysis, visualization, and network metrics calculation. Methods are | ||
| based on Grime (1974) <doi:10.1038/250026a0>, Pierce et al. (2017) | ||
| <doi:10.1111/1365-2435.12882>, Westoby (1998) | ||
| <doi:10.1023/A:1004327224729>, Yang et al. (2022) | ||
| <doi:10.1016/j.foreco.2022.120540>, Winemiller et al. (2015) | ||
| <doi:10.1111/ele.12462>, He et al. (2020) | ||
| <doi:10.1016/j.tree.2020.06.003>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
|
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
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| %files | ||
| %{rlibdir}/%{packname} |
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