use aligned_sequence.slice where possible

cfe-lab · Sep 27, 2023 · f8e578e · f8e578e
1 parent 189e5f9
commit f8e578e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/util/find_orf.py b/util/find_orf.py
@@ -60,7 +60,7 @@ def find_candidate_positions(aligned_sequence, e):
                     name=e.name,
                     start=closest_start,
                     end=closest_end,
-                    nucleotides=str(aligned_sequence.this.seq[closest_start:(closest_end + 1)]),
+                    nucleotides=str(aligned_sequence.slice(closest_start, closest_end).this.seq),
                     aminoacids=got_aminoacids,
                     protein=got_protein,
                     deletion_tolerence=e.deletion_tolerence,