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| source 'https://rubygems.org' | ||
| gem 'jekyll' | ||
| gem 'github-pages', group: :jekyll_plugins |
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| GEM | ||
| remote: https://rubygems.org/ | ||
| specs: | ||
| activesupport (7.0.4.3) | ||
| concurrent-ruby (~> 1.0, >= 1.0.2) | ||
| i18n (>= 1.6, < 2) | ||
| minitest (>= 5.1) | ||
| tzinfo (~> 2.0) | ||
| addressable (2.8.1) | ||
| public_suffix (>= 2.0.2, < 6.0) | ||
| coffee-script (2.4.1) | ||
| coffee-script-source | ||
| execjs | ||
| coffee-script-source (1.11.1) | ||
| colorator (1.1.0) | ||
| commonmarker (0.23.9) | ||
| concurrent-ruby (1.2.2) | ||
| dnsruby (1.61.9) | ||
| simpleidn (~> 0.1) | ||
| em-websocket (0.5.3) | ||
| eventmachine (>= 0.12.9) | ||
| http_parser.rb (~> 0) | ||
| ethon (0.16.0) | ||
| ffi (>= 1.15.0) | ||
| eventmachine (1.2.7) | ||
| execjs (2.8.1) | ||
| faraday (2.7.4) | ||
| faraday-net_http (>= 2.0, < 3.1) | ||
| ruby2_keywords (>= 0.0.4) | ||
| faraday-net_http (3.0.2) | ||
| ffi (1.15.5) | ||
| forwardable-extended (2.6.0) | ||
| gemoji (3.0.1) | ||
| github-pages (228) | ||
| github-pages-health-check (= 1.17.9) | ||
| jekyll (= 3.9.3) | ||
| jekyll-avatar (= 0.7.0) | ||
| jekyll-coffeescript (= 1.1.1) | ||
| jekyll-commonmark-ghpages (= 0.4.0) | ||
| jekyll-default-layout (= 0.1.4) | ||
| jekyll-feed (= 0.15.1) | ||
| jekyll-gist (= 1.5.0) | ||
| jekyll-github-metadata (= 2.13.0) | ||
| jekyll-include-cache (= 0.2.1) | ||
| jekyll-mentions (= 1.6.0) | ||
| jekyll-optional-front-matter (= 0.3.2) | ||
| jekyll-paginate (= 1.1.0) | ||
| jekyll-readme-index (= 0.3.0) | ||
| jekyll-redirect-from (= 0.16.0) | ||
| jekyll-relative-links (= 0.6.1) | ||
| jekyll-remote-theme (= 0.4.3) | ||
| jekyll-sass-converter (= 1.5.2) | ||
| jekyll-seo-tag (= 2.8.0) | ||
| jekyll-sitemap (= 1.4.0) | ||
| jekyll-swiss (= 1.0.0) | ||
| jekyll-theme-architect (= 0.2.0) | ||
| jekyll-theme-cayman (= 0.2.0) | ||
| jekyll-theme-dinky (= 0.2.0) | ||
| jekyll-theme-hacker (= 0.2.0) | ||
| jekyll-theme-leap-day (= 0.2.0) | ||
| jekyll-theme-merlot (= 0.2.0) | ||
| jekyll-theme-midnight (= 0.2.0) | ||
| jekyll-theme-minimal (= 0.2.0) | ||
| jekyll-theme-modernist (= 0.2.0) | ||
| jekyll-theme-primer (= 0.6.0) | ||
| jekyll-theme-slate (= 0.2.0) | ||
| jekyll-theme-tactile (= 0.2.0) | ||
| jekyll-theme-time-machine (= 0.2.0) | ||
| jekyll-titles-from-headings (= 0.5.3) | ||
| jemoji (= 0.12.0) | ||
| kramdown (= 2.3.2) | ||
| kramdown-parser-gfm (= 1.1.0) | ||
| liquid (= 4.0.4) | ||
| mercenary (~> 0.3) | ||
| minima (= 2.5.1) | ||
| nokogiri (>= 1.13.6, < 2.0) | ||
| rouge (= 3.26.0) | ||
| terminal-table (~> 1.4) | ||
| github-pages-health-check (1.17.9) | ||
| addressable (~> 2.3) | ||
| dnsruby (~> 1.60) | ||
| octokit (~> 4.0) | ||
| public_suffix (>= 3.0, < 5.0) | ||
| typhoeus (~> 1.3) | ||
| html-pipeline (2.14.3) | ||
| activesupport (>= 2) | ||
| nokogiri (>= 1.4) | ||
| http_parser.rb (0.8.0) | ||
| i18n (1.12.0) | ||
| concurrent-ruby (~> 1.0) | ||
| jekyll (3.9.3) | ||
| addressable (~> 2.4) | ||
| colorator (~> 1.0) | ||
| em-websocket (~> 0.5) | ||
| i18n (>= 0.7, < 2) | ||
| jekyll-sass-converter (~> 1.0) | ||
| jekyll-watch (~> 2.0) | ||
| kramdown (>= 1.17, < 3) | ||
| liquid (~> 4.0) | ||
| mercenary (~> 0.3.3) | ||
| pathutil (~> 0.9) | ||
| rouge (>= 1.7, < 4) | ||
| safe_yaml (~> 1.0) | ||
| jekyll-avatar (0.7.0) | ||
| jekyll (>= 3.0, < 5.0) | ||
| jekyll-coffeescript (1.1.1) | ||
| coffee-script (~> 2.2) | ||
| coffee-script-source (~> 1.11.1) | ||
| jekyll-commonmark (1.4.0) | ||
| commonmarker (~> 0.22) | ||
| jekyll-commonmark-ghpages (0.4.0) | ||
| commonmarker (~> 0.23.7) | ||
| jekyll (~> 3.9.0) | ||
| jekyll-commonmark (~> 1.4.0) | ||
| rouge (>= 2.0, < 5.0) | ||
| jekyll-default-layout (0.1.4) | ||
| jekyll (~> 3.0) | ||
| jekyll-feed (0.15.1) | ||
| jekyll (>= 3.7, < 5.0) | ||
| jekyll-gist (1.5.0) | ||
| octokit (~> 4.2) | ||
| jekyll-github-metadata (2.13.0) | ||
| jekyll (>= 3.4, < 5.0) | ||
| octokit (~> 4.0, != 4.4.0) | ||
| jekyll-include-cache (0.2.1) | ||
| jekyll (>= 3.7, < 5.0) | ||
| jekyll-mentions (1.6.0) | ||
| html-pipeline (~> 2.3) | ||
| jekyll (>= 3.7, < 5.0) | ||
| jekyll-optional-front-matter (0.3.2) | ||
| jekyll (>= 3.0, < 5.0) | ||
| jekyll-paginate (1.1.0) | ||
| jekyll-readme-index (0.3.0) | ||
| jekyll (>= 3.0, < 5.0) | ||
| jekyll-redirect-from (0.16.0) | ||
| jekyll (>= 3.3, < 5.0) | ||
| jekyll-relative-links (0.6.1) | ||
| jekyll (>= 3.3, < 5.0) | ||
| jekyll-remote-theme (0.4.3) | ||
| addressable (~> 2.0) | ||
| jekyll (>= 3.5, < 5.0) | ||
| jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0) | ||
| rubyzip (>= 1.3.0, < 3.0) | ||
| jekyll-sass-converter (1.5.2) | ||
| sass (~> 3.4) | ||
| jekyll-seo-tag (2.8.0) | ||
| jekyll (>= 3.8, < 5.0) | ||
| jekyll-sitemap (1.4.0) | ||
| jekyll (>= 3.7, < 5.0) | ||
| jekyll-swiss (1.0.0) | ||
| jekyll-theme-architect (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-cayman (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-dinky (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-hacker (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-leap-day (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-merlot (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-midnight (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-minimal (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-modernist (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-primer (0.6.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-github-metadata (~> 2.9) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-slate (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-tactile (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-theme-time-machine (0.2.0) | ||
| jekyll (> 3.5, < 5.0) | ||
| jekyll-seo-tag (~> 2.0) | ||
| jekyll-titles-from-headings (0.5.3) | ||
| jekyll (>= 3.3, < 5.0) | ||
| jekyll-watch (2.2.1) | ||
| listen (~> 3.0) | ||
| jemoji (0.12.0) | ||
| gemoji (~> 3.0) | ||
| html-pipeline (~> 2.2) | ||
| jekyll (>= 3.0, < 5.0) | ||
| kramdown (2.3.2) | ||
| rexml | ||
| kramdown-parser-gfm (1.1.0) | ||
| kramdown (~> 2.0) | ||
| liquid (4.0.4) | ||
| listen (3.8.0) | ||
| rb-fsevent (~> 0.10, >= 0.10.3) | ||
| rb-inotify (~> 0.9, >= 0.9.10) | ||
| mercenary (0.3.6) | ||
| mini_portile2 (2.8.1) | ||
| minima (2.5.1) | ||
| jekyll (>= 3.5, < 5.0) | ||
| jekyll-feed (~> 0.9) | ||
| jekyll-seo-tag (~> 2.1) | ||
| minitest (5.18.0) | ||
| nokogiri (1.14.3) | ||
| mini_portile2 (~> 2.8.0) | ||
| racc (~> 1.4) | ||
| octokit (4.25.1) | ||
| faraday (>= 1, < 3) | ||
| sawyer (~> 0.9) | ||
| pathutil (0.16.2) | ||
| forwardable-extended (~> 2.6) | ||
| public_suffix (4.0.7) | ||
| racc (1.6.2) | ||
| rb-fsevent (0.11.2) | ||
| rb-inotify (0.10.1) | ||
| ffi (~> 1.0) | ||
| rexml (3.2.5) | ||
| rouge (3.26.0) | ||
| ruby2_keywords (0.0.5) | ||
| rubyzip (2.3.2) | ||
| safe_yaml (1.0.5) | ||
| sass (3.7.4) | ||
| sass-listen (~> 4.0.0) | ||
| sass-listen (4.0.0) | ||
| rb-fsevent (~> 0.9, >= 0.9.4) | ||
| rb-inotify (~> 0.9, >= 0.9.7) | ||
| sawyer (0.9.2) | ||
| addressable (>= 2.3.5) | ||
| faraday (>= 0.17.3, < 3) | ||
| simpleidn (0.2.1) | ||
| unf (~> 0.1.4) | ||
| terminal-table (1.8.0) | ||
| unicode-display_width (~> 1.1, >= 1.1.1) | ||
| typhoeus (1.4.0) | ||
| ethon (>= 0.9.0) | ||
| tzinfo (2.0.6) | ||
| concurrent-ruby (~> 1.0) | ||
| unf (0.1.4) | ||
| unf_ext | ||
| unf_ext (0.0.8.2) | ||
| unicode-display_width (1.8.0) | ||
|
|
||
| PLATFORMS | ||
| ruby | ||
|
|
||
| DEPENDENCIES | ||
| github-pages | ||
| jekyll | ||
|
|
||
| BUNDLED WITH | ||
| 2.1.4 |
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| remote_theme: chrisrhymes/bulma-clean-theme | ||
| title: HIVIntact |
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| - name: Getting Started | ||
| link: /getting_started.html | ||
| - name: Admin | ||
| link: /admin.html | ||
| - name: Steps and Files | ||
| link: /steps.html | ||
| dropdown: | ||
| - name: G2P | ||
| link: /design/fastq_g2p.html | ||
| - name: Remap | ||
| link: /design/remap.html | ||
| - name: De Novo Assembly | ||
| link: /design/assembly.html | ||
| - name: Resistance | ||
| link: /design/resistance.html | ||
| - name: Genome Coverage | ||
| link: /genome_coverage.html | ||
| - name: GitHub | ||
| link: https://github.com/cfe-lab/HIVIntact |
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| <footer class="footer"> | ||
| <div class="container"> | ||
|
|
||
| {% if site.footer_menu %} | ||
| <div class="columns is-multiline"> | ||
| {% for item in site.data[site.footer_menu] %} | ||
| <div class="column has-text-centered"> | ||
| <div> | ||
| <a href="{{ item.link | relative_url }}" class="link">{{ item.name }}</a> | ||
| </div> | ||
| </div> | ||
| {% endfor %} | ||
| </div> | ||
| {% endif %} | ||
|
|
||
| <div class="content is-small has-text-centered"> | ||
| <p class=""> | ||
| This site is open source. {% github_edit_link "Improve this page" %}. | ||
| </p> | ||
| </div> | ||
| </div> | ||
| </footer> |