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do not include btop into blast.csv
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@Donaim
Donaim committed Sep 27, 2023
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Showing 10 changed files with 414 additions and 416 deletions.
14 changes: 7 additions & 7 deletions tests/expected-results-edgy/blast.csv
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand,btop
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,9718,1,9718,1,9718,0.0,13882,100.000,9718,plus,9718
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,9085,9718,1,634,0.0,882,98.580,625,plus,23AC57GA25GA55TG3AT7GA5TC44GA63GA343
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,1,634,9085,9718,0.0,882,98.580,625,plus,23CA57AG25AG55GT3TA7AG5CT44AG63AG343
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,9718,1,9718,9718,1,0.0,13882,100.000,9718,minus,9718
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,1,634,634,1,0.0,882,98.580,625,minus,343CT63CT44AG5CT7TA3AC55CT25CT57TG23
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,9085,9718,9718,9085,0.0,882,98.580,625,minus,343TC63TC44GA5TC7AT3CA55TC25TC57GT23
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,9718,1,9718,1,9718,0.0,13882,100.000,9718,plus
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,9085,9718,1,634,0.0,882,98.580,625,plus
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,1,634,9085,9718,0.0,882,98.580,625,plus
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,9718,1,9718,9718,1,0.0,13882,100.000,9718,minus
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,1,634,634,1,0.0,882,98.580,625,minus
Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455.BUT.REVERSED,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9718,9718,634,9085,9718,9718,9085,0.0,882,98.580,625,minus
236 changes: 118 additions & 118 deletions tests/expected-results-large-csv/blast.csv
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246 changes: 123 additions & 123 deletions tests/expected-results-large-hxb2/blast.csv
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236 changes: 118 additions & 118 deletions tests/expected-results-large/blast.csv
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8 changes: 4 additions & 4 deletions tests/expected-results-single-csv/blast.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand,btop
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA153TC12AG13AC37AG40T-T-T-T-63AG9AG6GA36CA27AG3AG11TC27AT7AC32TC25AG51TGGA19AT5TC23GA6GA8AC1AG21AC7CT33CA1TC5CG11CT42AG28AG62TC41AG107CT65CT41GA8TC17TC17AG3TC10TC17CT14TC8CT48TG1AG20CT19GCAG38GA17AG8CT67GA6GA32GA5TC1TC81AG23AG12CT7GA8AG5CT11GA37TC5AT16TC14TC3CT2GA12T-C-C-7GA10AG106AG47TC24TCCT30GT56AG8TC11CT8TC8AG84AGCT15AG65TC17CT41AG11TC20GA11AC74GA2TC114TA127AGTC26TC109AC23AG11TG26TCGC7CT7AGAG14TC5GA3GA64GA6TC91GA48GA56GA4TA37GAGATC1AG11AG65CT65TC18TG4TC2AG33GA1CT11GA9TA44CT19AG66AC34AG11CA14CTTC58TC3AG7TC2AG38AT14CT47GA7GA84GA95AG14CT5CT41AT11TC8TCAG2AG4AG4AG21GA11GA5CA80CT17AG26TC147GA28TC26GA8CT34TC3AG119AG32AC27TCGA64TC40GA24CTAG1CA14GA20TC11AC13GATG3AT10TC8TC5TG41GA9TC24GA2GT6CA15GA1AG2GA45CA10TC1TCCA1GT62GT32CA18AG43CT2TC8GA10AG16AG3TC3CA9AG15AG37CT8GA12TACA30TC5CT8GA57TCCA3AGGA18TC34AC1CATC2TA3AC4TGCT13AT17CA19TC6TA40TC15AC3GT36GA2TACAATGAGTAC2AC3A-1CGATAGCG2CAATCGTGTGAG-G48GA3GACA2TA38AG46GA66GAAGGT5AT21TC7GA4CGCAAC29TC35GA2GA14CT1CG6TG12GAGAAGCA1GT2GT1GC-T-A-A8AG2AG2TG1AGCGAGGA3GTTG3-A-T-G11AG2GA21TACG1TA6AT1GA2AG6GT3TG13CT16GA2GA9GA4AG3A-G-A-3A-T-G-G-T-A-A-T-T-A-T-T-1TC7GA5TC9TC29AG5AC22TA15GT1AT12GA6GA4AGCAACAG41GA50TC34CT43CAAC14CA13GAGATC10TG2GA1GA1GAGA1TC1AGCT2GC-C-A-G-A-G-A10AGGA6TGAT1GA2GAGT2CG2TA2CT4GA4AG3AC12TA5AG2AG12CT1GATC7GA2TA1GA3TC1GACGAC8TA2GA6AG1GA-A-A-T13AT5CATG3CT28AG39AT5AC20ATAT1G-C-2CT1CG-T2AT1-G2TG2AC2GATAAGCGTG1GCGA3GA1TC5GA4AG1-G-A-C-A-C-A45GA34AT20CA12TC25GT1CGTC3GA1-T3CTA-A-C-A-C-C-A-10TC23AG40GA15GA66CT44AG1GC2GA3GA2TC40AG20AG17AG3TC23GA20GA8CG35TA36AC38GA3AG6GA1GTAC3TC18AC9GA1TC18TC2AT1TC6AGCA9GA1TA3AG6CA8AC7GA8GA13AG16GAGA9CT11CT6AT4TC20AG59CT22GA1TC5GA30TC37GACT2CG9AC4TC3AG13TA6AG50ATAG42TC9CT1TG5GA17CGAT72AG11TG5AG3TC2TG9CT1TG3TC2CA4CG18TG6GACT16GT21TG2GA12AC40GA12TC10TC6GA21TC9AG3AC8AC22AG129AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC20CT-T56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus,24AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC18-T2CT56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA134
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus
8 changes: 4 additions & 4 deletions tests/expected-results-single-hxb2/blast.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand,btop
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA153TC12AG13AC37AG40T-T-T-T-63AG9AG6GA36CA27AG3AG11TC27AT7AC32TC25AG51TGGA19AT5TC23GA6GA8AC1AG21AC7CT33CA1TC5CG11CT42AG28AG62TC41AG107CT65CT41GA8TC17TC17AG3TC10TC17CT14TC8CT48TG1AG20CT19GCAG38GA17AG8CT67GA6GA32GA5TC1TC81AG23AG12CT7GA8AG5CT11GA37TC5AT16TC14TC3CT2GA12T-C-C-7GA10AG106AG47TC24TCCT30GT56AG8TC11CT8TC8AG84AGCT15AG65TC17CT41AG11TC20GA11AC74GA2TC114TA127AGTC26TC109AC23AG11TG26TCGC7CT7AGAG14TC5GA3GA64GA6TC91GA48GA56GA4TA37GAGATC1AG11AG65CT65TC18TG4TC2AG33GA1CT11GA9TA44CT19AG66AC34AG11CA14CTTC58TC3AG7TC2AG38AT14CT47GA7GA84GA95AG14CT5CT41AT11TC8TCAG2AG4AG4AG21GA11GA5CA80CT17AG26TC147GA28TC26GA8CT34TC3AG119AG32AC27TCGA64TC40GA24CTAG1CA14GA20TC11AC13GATG3AT10TC8TC5TG41GA9TC24GA2GT6CA15GA1AG2GA45CA10TC1TCCA1GT62GT32CA18AG43CT2TC8GA10AG16AG3TC3CA9AG15AG37CT8GA12TACA30TC5CT8GA57TCCA3AGGA18TC34AC1CATC2TA3AC4TGCT13AT17CA19TC6TA40TC15AC3GT36GA2TACAATGAGTAC2AC3A-1CGATAGCG2CAATCGTGTGAG-G48GA3GACA2TA38AG46GA66GAAGGT5AT21TC7GA4CGCAAC29TC35GA2GA14CT1CG6TG12GAGAAGCA1GT2GT1GC-T-A-A8AG2AG2TG1AGCGAGGA3GTTG3-A-T-G11AG2GA21TACG1TA6AT1GA2AG6GT3TG13CT16GA2GA9GA4AG3A-G-A-3A-T-G-G-T-A-A-T-T-A-T-T-1TC7GA5TC9TC29AG5AC22TA15GT1AT12GA6GA4AGCAACAG41GA50TC34CT43CAAC14CA13GAGATC10TG2GA1GA1GAGA1TC1AGCT2GC-C-A-G-A-G-A10AGGA6TGAT1GA2GAGT2CG2TA2CT4GA4AG3AC12TA5AG2AG12CT1GATC7GA2TA1GA3TC1GACGAC8TA2GA6AG1GA-A-A-T13AT5CATG3CT28AG39AT5AC20ATAT1G-C-2CT1CG-T2AT1-G2TG2AC2GATAAGCGTG1GCGA3GA1TC5GA4AG1-G-A-C-A-C-A45GA34AT20CA12TC25GT1CGTC3GA1-T3CTA-A-C-A-C-C-A-10TC23AG40GA15GA66CT44AG1GC2GA3GA2TC40AG20AG17AG3TC23GA20GA8CG35TA36AC38GA3AG6GA1GTAC3TC18AC9GA1TC18TC2AT1TC6AGCA9GA1TA3AG6CA8AC7GA8GA13AG16GAGA9CT11CT6AT4TC20AG59CT22GA1TC5GA30TC37GACT2CG9AC4TC3AG13TA6AG50ATAG42TC9CT1TG5GA17CGAT72AG11TG5AG3TC2TG9CT1TG3TC2CA4CG18TG6GACT16GT21TG2GA12AC40GA12TC10TC6GA21TC9AG3AC8AC22AG129AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC20CT-T56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus,24AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC18-T2CT56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA134
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus
8 changes: 4 additions & 4 deletions tests/expected-results-single/blast.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand,btop
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA153TC12AG13AC37AG40T-T-T-T-63AG9AG6GA36CA27AG3AG11TC27AT7AC32TC25AG51TGGA19AT5TC23GA6GA8AC1AG21AC7CT33CA1TC5CG11CT42AG28AG62TC41AG107CT65CT41GA8TC17TC17AG3TC10TC17CT14TC8CT48TG1AG20CT19GCAG38GA17AG8CT67GA6GA32GA5TC1TC81AG23AG12CT7GA8AG5CT11GA37TC5AT16TC14TC3CT2GA12T-C-C-7GA10AG106AG47TC24TCCT30GT56AG8TC11CT8TC8AG84AGCT15AG65TC17CT41AG11TC20GA11AC74GA2TC114TA127AGTC26TC109AC23AG11TG26TCGC7CT7AGAG14TC5GA3GA64GA6TC91GA48GA56GA4TA37GAGATC1AG11AG65CT65TC18TG4TC2AG33GA1CT11GA9TA44CT19AG66AC34AG11CA14CTTC58TC3AG7TC2AG38AT14CT47GA7GA84GA95AG14CT5CT41AT11TC8TCAG2AG4AG4AG21GA11GA5CA80CT17AG26TC147GA28TC26GA8CT34TC3AG119AG32AC27TCGA64TC40GA24CTAG1CA14GA20TC11AC13GATG3AT10TC8TC5TG41GA9TC24GA2GT6CA15GA1AG2GA45CA10TC1TCCA1GT62GT32CA18AG43CT2TC8GA10AG16AG3TC3CA9AG15AG37CT8GA12TACA30TC5CT8GA57TCCA3AGGA18TC34AC1CATC2TA3AC4TGCT13AT17CA19TC6TA40TC15AC3GT36GA2TACAATGAGTAC2AC3A-1CGATAGCG2CAATCGTGTGAG-G48GA3GACA2TA38AG46GA66GAAGGT5AT21TC7GA4CGCAAC29TC35GA2GA14CT1CG6TG12GAGAAGCA1GT2GT1GC-T-A-A8AG2AG2TG1AGCGAGGA3GTTG3-A-T-G11AG2GA21TACG1TA6AT1GA2AG6GT3TG13CT16GA2GA9GA4AG3A-G-A-3A-T-G-G-T-A-A-T-T-A-T-T-1TC7GA5TC9TC29AG5AC22TA15GT1AT12GA6GA4AGCAACAG41GA50TC34CT43CAAC14CA13GAGATC10TG2GA1GA1GAGA1TC1AGCT2GC-C-A-G-A-G-A10AGGA6TGAT1GA2GAGT2CG2TA2CT4GA4AG3AC12TA5AG2AG12CT1GATC7GA2TA1GA3TC1GACGAC8TA2GA6AG1GA-A-A-T13AT5CATG3CT28AG39AT5AC20ATAT1G-C-2CT1CG-T2AT1-G2TG2AC2GATAAGCGTG1GCGA3GA1TC5GA4AG1-G-A-C-A-C-A45GA34AT20CA12TC25GT1CGTC3GA1-T3CTA-A-C-A-C-C-A-10TC23AG40GA15GA66CT44AG1GC2GA3GA2TC40AG20AG17AG3TC23GA20GA8CG35TA36AC38GA3AG6GA1GTAC3TC18AC9GA1TC18TC2AT1TC6AGCA9GA1TA3AG6CA8AC7GA8GA13AG16GAGA9CT11CT6AT4TC20AG59CT22GA1TC5GA30TC37GACT2CG9AC4TC3AG13TA6AG50ATAG42TC9CT1TG5GA17CGAT72AG11TG5AG3TC2TG9CT1TG3TC2CA4CG18TG6GACT16GT21TG2GA12AC40GA12TC10TC6GA21TC9AG3AC8AC22AG129AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC20CT-T56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus,24AG12TC8AG91TA20-C-A-G-A-T-A-A-G-A-T-A-G-A-A-G-A-G-G3CA1GA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT8AT9GA34GA12AG27AT23TG31G-21GA1AT22GC18-T2CT56GA134
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus,23ACAG12TC8AG34GA25GA30TA20-C-A-G-A-G-A-A-G-T-T-A-G-A-A-G-A-A-G3CATCGA1CAAG7TCGAAC3AC3CT1GA7CTAG8GT2GA5AT9GA34GA40AT23TG31G-21GA1AT22GC18-T2CT56GA134
qseqid,sseqid,sgi,qlen,slen,length,qstart,qend,sstart,send,evalue,bitscore,pident,nident,sstrand
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,9752,1,9689,1,9718,0.0,12000,93.294,9098,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,1,616,9085,9718,0.0,763,92.441,587,plus
MN692145,Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455,0,9689,9718,635,9074,9689,1,634,0.0,752,91.811,583,plus
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