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test: add single sequence test main #61: Commit f59d54b pushed by Donaim
March 12, 2024 20:09 57s master
master
March 12, 2024 20:09 57s
remove unused code main #60: Commit d5140c7 pushed by Donaim
March 12, 2024 20:09 52s master
master
March 12, 2024 20:09 52s
use optimized version of subtype positions mapping main #59: Commit 5c3a554 pushed by Donaim
March 12, 2024 20:09 1m 38s master
master
March 12, 2024 20:09 1m 38s
use optimized version of positions mapping main #58: Commit 22353e2 pushed by Donaim
March 12, 2024 20:09 1m 10s master
master
March 12, 2024 20:09 1m 10s
util: use convert helper for both HXB2 conversions main #57: Commit 950cfd6 pushed by Donaim
March 12, 2024 20:09 1m 24s master
master
March 12, 2024 20:09 1m 24s
Add coordinates helper procedure main #56: Commit b24a4db pushed by Donaim
March 12, 2024 20:09 1m 24s master
master
March 12, 2024 20:09 1m 24s
Factor out convert_from_aligned_to_reference main #55: Commit 46db8fd pushed by Donaim
March 12, 2024 20:09 1m 24s master
master
March 12, 2024 20:09 1m 24s
subtypes: handle the case where and end is not found main #54: Commit 2ed9aaf pushed by Donaim
March 12, 2024 20:09 1m 12s master
master
March 12, 2024 20:09 1m 12s
simplify finding the best matching frame code main #53: Commit 90b33a9 pushed by Donaim
March 12, 2024 20:09 51s master
master
March 12, 2024 20:09 51s
fix blast_iterate_inf default value main #52: Commit 2a906b7 pushed by Donaim
March 12, 2024 20:09 1m 33s master
master
March 12, 2024 20:09 1m 33s
update README to mention BLAST dependency main #51: Commit f14f8af pushed by Donaim
March 12, 2024 20:09 1m 0s master
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March 12, 2024 20:09 1m 0s
replace deprecated pkg_resources package main #50: Commit c57d265 pushed by Donaim
March 12, 2024 20:09 1m 2s master
master
March 12, 2024 20:09 1m 2s
test: enable nonhiv, scramble and internal inversion checks main #49: Commit 2c4ed18 pushed by Donaim
March 12, 2024 20:09 1m 35s master
master
March 12, 2024 20:09 1m 35s
fix blast_rows alignment with sequences main #48: Commit 7371fa3 pushed by Donaim
March 12, 2024 20:09 1m 0s master
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March 12, 2024 20:09 1m 0s
test: remove dead code main #47: Commit 1e26b3e pushed by Donaim
March 12, 2024 20:09 1m 46s master
master
March 12, 2024 20:09 1m 46s
run nonhiv, scramble and internal inversion checks main #46: Commit 348953b pushed by Donaim
March 12, 2024 20:09 1m 14s master
master
March 12, 2024 20:09 1m 14s
use most frequent element to determine scramble check direction main #45: Commit 67ac930 pushed by Donaim
March 12, 2024 20:09 54s master
master
March 12, 2024 20:09 54s
simplify reading of BLAST output main #44: Commit 94902f9 pushed by Donaim
March 12, 2024 20:09 1m 6s master
master
March 12, 2024 20:09 1m 6s
handle the case when BLAST produces no output main #43: Commit db116db pushed by Donaim
March 12, 2024 20:09 1m 0s master
master
March 12, 2024 20:09 1m 0s
fix case of shorter blast output main #42: Commit e39ff56 pushed by Donaim
March 12, 2024 20:09 58s master
master
March 12, 2024 20:09 58s
fix first blast_rows instance main #41: Commit b449323 pushed by Donaim
March 12, 2024 20:09 54s master
master
March 12, 2024 20:09 54s
do not run blast unless required main #40: Commit 8dc9dd1 pushed by Donaim
March 12, 2024 20:09 1m 2s master
master
March 12, 2024 20:09 1m 2s
iterate blast_rows together with sequences main #39: Commit 52100f5 pushed by Donaim
March 12, 2024 20:09 1m 7s master
master
March 12, 2024 20:09 1m 7s
ci: install BLAST main #38: Commit da2552d pushed by Donaim
March 12, 2024 20:09 1m 8s master
master
March 12, 2024 20:09 1m 8s
add missing iterate_values_from_tsv function main #37: Commit 5c54658 pushed by Donaim
March 12, 2024 20:09 1m 18s master
master
March 12, 2024 20:09 1m 18s
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