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improve internal deletion detection
main #111: Commit fda4d64 pushed by Donaim
March 12, 2024 20:10 2m 15s master
March 12, 2024 20:10 2m 15s
flush output writers for each sequence
main #110: Commit ff368bd pushed by Donaim
March 12, 2024 20:10 3m 16s master
March 12, 2024 20:10 3m 16s
fill out .json files online
main #109: Commit 7af6d4a pushed by Donaim
March 12, 2024 20:10 2m 17s master
March 12, 2024 20:10 2m 17s
fill output .fasta files online
main #108: Commit 2020ec0 pushed by Donaim
March 12, 2024 20:10 2m 37s master
March 12, 2024 20:10 2m 37s
make sure that all sequences are uppercase
main #107: Commit e9eac16 pushed by Donaim
March 12, 2024 20:10 2m 17s master
March 12, 2024 20:10 2m 17s
nonhiv check: test the absolute length as well
main #106: Commit 8b7c24c pushed by Donaim
March 12, 2024 20:10 2m 16s master
March 12, 2024 20:10 2m 16s
return more precise difference in orfs.json
main #105: Commit 7b71af3 pushed by Donaim
March 12, 2024 20:10 2m 45s master
March 12, 2024 20:10 2m 45s
add more information about found ORFs
main #104: Commit b508a07 pushed by Donaim
March 12, 2024 20:10 2m 20s master
March 12, 2024 20:10 2m 20s
dont make distance negative
main #103: Commit 0ad787e pushed by Donaim
March 12, 2024 20:10 2m 13s master
March 12, 2024 20:10 2m 13s
fix end position clamping
main #102: Commit eb1136e pushed by Donaim
March 12, 2024 20:10 2m 19s master
March 12, 2024 20:10 2m 19s
replace jarowinkler by jaro similarity
main #101: Commit 43d3380 pushed by Donaim
March 12, 2024 20:10 2m 30s master
March 12, 2024 20:10 2m 30s
clamp deletions and insertions counters
main #100: Commit cffaa51 pushed by Donaim
March 12, 2024 20:10 2m 16s master
March 12, 2024 20:10 2m 16s
add missing imports
main #99: Commit cca892f pushed by Donaim
March 12, 2024 20:10 2m 32s master
March 12, 2024 20:10 2m 32s
handle translation errors
main #98: Commit 211e6c5 pushed by Donaim
March 12, 2024 20:10 3m 14s master
March 12, 2024 20:10 3m 14s
remove reading_frames_single_stranded function
main #97: Commit 23ddbab pushed by Donaim
March 12, 2024 20:10 2m 30s master
March 12, 2024 20:10 2m 30s
remove has_reading_frames function
main #96: Commit a90ce82 pushed by Donaim
March 12, 2024 20:10 3m 14s master
March 12, 2024 20:10 3m 14s
handle empty alignment error
main #95: Commit bc695b9 pushed by Donaim
March 12, 2024 20:10 2m 27s master
March 12, 2024 20:10 2m 27s
use small_frames analysis for large frames too
main #94: Commit 401cd47 pushed by Donaim
March 12, 2024 20:10 2m 15s master
March 12, 2024 20:10 2m 15s
make gap more costly than mutations in the aligner
main #93: Commit 3cf1ee5 pushed by Donaim
March 12, 2024 20:10 2m 21s master
March 12, 2024 20:10 2m 21s
rework indel detection and add too many insertions error
main #92: Commit c0c41b5 pushed by Donaim
March 12, 2024 20:10 2m 43s master
March 12, 2024 20:10 2m 43s
improve defective indels detection
main #91: Commit 5e5ae77 pushed by Donaim
March 12, 2024 20:10 3m 8s master
March 12, 2024 20:10 3m 8s
revert to protein-based deletions count
main #90: Commit fbda016 pushed by Donaim
March 12, 2024 20:10 3m 34s master
March 12, 2024 20:10 3m 34s
bump program version
main #89: Commit 273b950 pushed by Donaim
March 12, 2024 20:10 3m 12s master
March 12, 2024 20:10 3m 12s
improve counting of deletions
main #88: Commit de2149d pushed by Donaim
March 12, 2024 20:10 2m 33s master
March 12, 2024 20:10 2m 33s
fix out-of-rame indel detection
main #87: Commit 2b2fcaa pushed by Donaim
March 12, 2024 20:10 2m 10s master
March 12, 2024 20:10 2m 10s
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