Factor out convert_from_aligned_to_reference

cfe-lab · Jun 17, 2023 · 46db8fd · 46db8fd
1 parent 2ed9aaf
commit 46db8fd
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/util/subtypes.py b/util/subtypes.py
@@ -82,6 +82,9 @@ def convert_from_subtype_to_hxb2(position, orientation, subtype):
 
     alignment = wrappers.mafft(sequences)
 
+    return convert_from_aligned_to_reference(position, alignment)
+
+def convert_from_aligned_to_reference(position, alignment):
     hxb2_pos = 0
     subtype_pos = 0
     for i in range(len(alignment[0])):