dont make distance negative

cfe-lab · Jun 30, 2023 · 0ad787e · 0ad787e
1 parent eb1136e
commit 0ad787e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/intact/intact.py b/intact/intact.py
@@ -553,7 +553,7 @@ def find_candidate_positions(e, q_start, q_end):
                     closest_start_a = q_start_a if not has_start_codon else find_closest(aminoacids, q_start_a, start_direction, 'M')
                     closest_end_a = q_end_a if not has_stop_codon else find_closest(aminoacids, q_end_a, end_direction, '*')
                     got_aminoacids = aminoacids[closest_start_a:closest_end_a + 1]
-                    dist = -1 * jaro_similarity(got_aminoacids, expected_aminoacids)
+                    dist = 1 - jaro_similarity(got_aminoacids, expected_aminoacids)
                     closest_start = min(n, (closest_start_a * 3) + frame)
                     closest_end = min(n + 1, (closest_end_a * 3) + 3 + frame)
                     yield CandidateORF(closest_start, closest_end, "forward",