Version 0.2.0

Pergola is now compatible with Python 3.
All test passed.

Version 0.1.7

• Mapping fields allow no comments, and the recognition is not based on them (problem with web) #25
• Update license year
• Version for NAR web-server resubmission

Version 0.1.6

• End time set by window creation always set to be smaller than maximum value in original data #15
• More intuitive names for pergola scripts options. Old ones are conserved to maintain backwards compatibility with older versions, #19
• Output file name can be set using -o, --output_file_name flag. When multiple input files are found, output files are named with an ordinal at the beginning, #20
• Version is set in pergola/_version.py and retrieve from there elsewhere, including the scripts (pergola_rules, jaaba_to_pergola and pergola_isatab). In this latter case using -v flag.
• Time shift and first phase can be set from pergola script. Implemented as --starting_phase and --shift options. Closes #22

Version 0.1.5

• Option to avoid the creation of FASTA files on pergola script
• Option to avoid the creation of phases file on pergola script
• Light phases are created by default by write_cytoband function

Version 0.1.4

• Fixed Tracks without values after minimum and maximun filtering breaks execution #11
• Fixed Checking to avoid minimum time point to be greater than maximum time point #10
• Fixed Option to set maximum value for chrom.sizes creation #12
• Fixed Option to set minimum value for chrom.sizes creation #12

Version 0.1.3

• Warning if number of fields in the mapping fields exceeds the number of fields in input #8
• Min and max coordinates when creating FASTA file can be set by the user in pergola script #7
• Option in pergola script to choose whether phases file has to be created #6
• Option in pergola script to choose whether FASTA file has to be created #9

Version 0.1.2

• Documentation extensively modified.

• Fixed pergola_isatab fails to download files from URL #5

• Sample data set centralized and unified

Version 0.1.1

• Adds support to input files in xlsx format #4
• Fixed reading mapping file with "\r" as end of line
• Updates documentation

First Pergola release

First Pergola release a library to analyze longitudinal behavioral data by the integration of its own functionalities and genomic software tools.