Support Intan "one-file-per-signal" and "one-file-per-channel" formats.

.github/workflows/dev-testing.yml

@@ -74,7 +74,7 @@ jobs:
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
-          key: ephys-datasets-2023-06-26-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
+          key: ephys-datasets-2024-03-27-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
       - name: Get ophys_testing_data current head hash
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"

.github/workflows/doctests.yml

@@ -39,7 +39,7 @@ jobs:
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
-          key: ephys-datasets-2023-06-26-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
+          key: ephys-datasets-2024-03-27-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
       - name: Get ophys_testing_data current head hash
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"

.github/workflows/formatwise-installation-testing.yml

@@ -46,7 +46,7 @@ jobs:
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
-          key: ephys-datasets-2023-06-26-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
+          key: ephys-datasets-2024-03-27-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
       - name: Get ophys_testing_data current head hash
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"

.github/workflows/testing.yml

@@ -88,7 +88,7 @@ jobs:
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
-          key: ephys-datasets-2023-06-26-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
+          key: ephys-datasets-2024-03-27-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
       - name: Get ophys_testing_data current head hash
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"

.github/workflows/update-s3-testing-data.yml

@@ -30,7 +30,7 @@ jobs:
         id: ephys
         run: echo "::set-output name=HASH_EPHY_DATASET::$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)"
       - name: Cache ephys dataset - ${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
-        uses: actions/cache@v2
+        uses: actions/cache@v4
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
@@ -40,7 +40,7 @@ jobs:
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"
       - name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
-        uses: actions/cache@v2
+        uses: actions/cache@v4
         id: cache-ophys-datasets
         with:
           path: ./ophys_testing_data
@@ -50,7 +50,7 @@ jobs:
         id: behavior
         run: echo "::set-output name=HASH_BEHAVIOR_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/behavior_testing_data.git HEAD | cut -f1)"
       - name: Cache behavior dataset - ${{ steps.behavior.outputs.HASH_BEHAVIOR_DATASET }}
-        uses: actions/cache@v2
+        uses: actions/cache@v4
         id: cache-behavior-datasets
         with:
           path: ./behavior_testing_data

CHANGELOG.md

@@ -1,10 +1,23 @@
 # Upcoming
 
+
 ### Deprecations
 * Removed `stream_id` as an argument from `IntanRecordingInterface` [PR #794](https://github.com/catalystneuro/neuroconv/pull/794)
 * The usage of `compression` and `compression_opts` directly through the `neuroconv.tools.spikeinterface` submodule are now deprecated - users should refer to the new `configure_backend` method for a general approach for setting compression. [PR #805](https://github.com/catalystneuro/neuroconv/pull/805)
  * Dropped the testing of python 3.8 on the CI [PR #853](https://github.com/catalystneuro/neuroconv/pull/853)
 
+### Features
+* Added `backend` control to the `make_or_load_nwbfile` helper method in `neuroconv.tools.nwb_helpers`. [PR #800](https://github.com/catalystneuro/neuroconv/pull/800)
+* Released the first official Docker images for the package on the GitHub Container Repository (GHCR). [PR #383](https://github.com/catalystneuro/neuroconv/pull/383)
+* Support "one-file-per-signal" and "one-file-per-channel" mode with `IntanRecordingInterface` [PR #791](https://github.com/catalystneuro/neuroconv/pull/791)
+* Added `get_default_backend_configuration` method to all `DataInterface` classes. Also added HDF5 `backend` control to all standalone `.run_conversion(...)` methods for those interfaces. [PR #801](https://github.com/catalystneuro/neuroconv/pull/801)
+* Added `get_default_backend_configuration` method to all `NWBConverter` classes. Also added HDF5 `backend` control to `.run_conversion(...)`. [PR #804](https://github.com/catalystneuro/neuroconv/pull/804)
+* Released the first official Docker images for the package on the GitHub Container Repository (GHCR). [PR #383](https://github.com/catalystneuro/neuroconv/pull/383)
+* Added `ScanImageMultiFileImagingInterface` for multi-file (buffered) ScanImage format and changed `ScanImageImagingInterface` to be routing classes for single and multi-plane imaging. [PR #809](https://github.com/catalystneuro/neuroconv/pull/809)
+* Improve printing of bytes [PR #831](https://github.com/catalystneuro/neuroconv/pull/831)
+* Added `configure_and_write_nwbfile` and optimized imports in `tools.nwb_helpers` module. [PR #848](https://github.com/catalystneuro/neuroconv/pull/848)
+
+
 ### Bug fixes
 * Remove JSON Schema `definitions` from the `properties` field. [PR #818](https://github.com/catalystneuro/neuroconv/pull/818)
 * Fixed writing waveforms directly to file. [PR #799](https://github.com/catalystneuro/neuroconv/pull/799)
@@ -15,26 +28,18 @@
 * Added `XX` and `XO` to the base metadata schema. [PR #833](https://github.com/catalystneuro/neuroconv/pull/833)
 * `BaseImagingExtractor.add_to_nwbfile()` is fixed in the case where metadata is not supplied [PR #849](https://github.com/catalystneuro/neuroconv/pull/849)
 
-### Features
-* Added `backend` control to the `make_or_load_nwbfile` helper method in `neuroconv.tools.nwb_helpers`. [PR #800](https://github.com/catalystneuro/neuroconv/pull/800)
-* Added `get_default_backend_configuration` method to all `DataInterface` classes. Also added HDF5 `backend` control to all standalone `.run_conversion(...)` methods for those interfaces. [PR #801](https://github.com/catalystneuro/neuroconv/pull/801)
-* Added `get_default_backend_configuration` method to all `NWBConverter` classes. Also added HDF5 `backend` control to `.run_conversion(...)`. [PR #804](https://github.com/catalystneuro/neuroconv/pull/804)
-* Released the first official Docker images for the package on the GitHub Container Repository (GHCR). [PR #383](https://github.com/catalystneuro/neuroconv/pull/383)
-* Added `ScanImageMultiFileImagingInterface` for multi-file (buffered) ScanImage format and changed `ScanImageImagingInterface` to be routing classes for single and multi-plane imaging. [PR #809](https://github.com/catalystneuro/neuroconv/pull/809)
-* Improve printing of bytes [PR #831](https://github.com/catalystneuro/neuroconv/pull/831)
-* Added `configure_and_write_nwbfile` and optimized imports in `tools.nwb_helpers` module. [PR #848](https://github.com/catalystneuro/neuroconv/pull/848)
 
 ### Improvements
 * Fixed docstrings related to backend configurations for various methods. [PR #822](https://github.com/catalystneuro/neuroconv/pull/822)
 * Added automatic `backend` detection when a `backend_configuration` is passed to an interface or converter. [PR #840]
   (https://github.
   com/catalystneuro/neuroconv/pull/840)
 
+
 ### Testing
 * Add general test for metadata in-place modification by interfaces. [PR #815](https://github.com/catalystneuro/neuroconv/pull/815)
 
 
-
 # v0.4.8 (March 20, 2024)
 
 ### Bug fixes

src/neuroconv/datainterfaces/ecephys/requirements.txt

@@ -1 +1,2 @@
-spikeinterface>=0.100.0
+spikeinterface>=0.100.1,<0.100.6
+neo>=0.13.1

tests/test_on_data/test_gin_ecephys/test_raw_recordings.py

@@ -189,6 +189,23 @@ class TestEcephysRawRecordingsNwbConversions(unittest.TestCase):
             )
         )
 
+    # Intan multiple files format
+    parameterized_recording_list.append(
+        param(
+            data_interface=IntanRecordingInterface,
+            interface_kwargs=dict(file_path=str(DATA_PATH / "intan" / "intan_fpc_test_231117_052630/info.rhd")),
+            case_name="one-file-per-channel",
+        )
+    )
+
+    parameterized_recording_list.append(
+        param(
+            data_interface=IntanRecordingInterface,
+            interface_kwargs=dict(file_path=str(DATA_PATH / "intan" / "intan_fps_test_231117_052500/info.rhd")),
+            case_name="one-file-per-signal",
+        )
+    )
+
     file_name_list = ["20210225_em8_minirec2_ac", "W122_06_09_2019_1_fromSD"]
     num_channels_list = [512, 128]
     file_name_num_channels_pairs = zip(file_name_list, num_channels_list)