Skip to content

Issues: cancerit/CaVEMan

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

18 Open 49 Closed
18 Open 49 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

caveman count crashes with "corrupted size vs. prev_size" when ignore_regions_file is compressed
#123 opened Jul 12, 2024 by FMakosza
Error during mstep for whole exome sequencing data
#118 opened Jan 8, 2024 by pawanchk
1
Continuous "core dumped" errors during the M step
#117 opened Mar 14, 2023 by KANGseungseok
2
Implement.pm line 378 - species-assembly
#116 opened Mar 3, 2023 by acarbome7
Inquiry about the CaVEman option for running WGS data
#115 opened Feb 17, 2023 by KANGseungseok
Filtering fail "."
#113 opened Sep 19, 2022 by Mathieu179
Merge - Warning
#110 opened May 13, 2022 by pawanchk
Mstep - Error fetching reference sequence
#109 opened May 9, 2022 by pawanchk
1
ignore region files
#107 opened Nov 25, 2021 by onrerdogan
providing several samples for normal
#106 opened Sep 3, 2021 by husamia
1
different tumor / normal platforms could be a warning instead of an error?
#100 opened Jun 26, 2020 by jsmedmar
VCF where ref == alt
#95 opened Oct 14, 2019 by kmhernan
1.13.15: -x and -y parameters don't work in estep
#94 opened Sep 10, 2019 by zhuyezhang
1
1.13.9 - split error
#86 opened Nov 30, 2018 by WillieYu
1
1.13.5 - mstep errors - negative positions
#84 opened Sep 13, 2018 by ghost
Incorrect genotype sorting in SNP calls bug
#63 opened Feb 16, 2017 by ghost
no calls gives unusual file sets
#40 opened Aug 17, 2015 by keiranmraine
2
generateCavemanUMNormVCF - get sample names from BAM header enhancement
#35 opened Jul 14, 2015 by keiranmraine
ProTip! Adding no:label will show everything without a label.