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Hello,
I would like to use Caveman to call somatic variants from WGS samples.
The section size used in the split and M/E steps is too small for running WGS, requiring a large number of threads per sample.
However, when I try to increase the section size using the "--read-count" option in split, I get an out of memory error.
Are there any options to adjust the memory allocation or could you recommend options for 30x WGS?
Thank you sincerely
The text was updated successfully, but these errors were encountered:
Hello,
I would like to use Caveman to call somatic variants from WGS samples.
The section size used in the split and M/E steps is too small for running WGS, requiring a large number of threads per sample.
However, when I try to increase the section size using the "--read-count" option in split, I get an out of memory error.
Are there any options to adjust the memory allocation or could you recommend options for 30x WGS?
Thank you sincerely
The text was updated successfully, but these errors were encountered: