chore: rename as per PEP 8

README.md

@@ -55,9 +55,9 @@ Installation:
   > pip install --upgrade --editable ".[dev]"
   > ```
 
-- Check the module `icesat2_tracks` is available by loading the module:
+- Check the module `icesat2waves` is available by loading the module:
   ```shell
-  python -c "import icesat2_tracks; print(icesat2_tracks.__version__)"
+  python -c "import icesat2waves; print(icesat2waves.__version__)"
   ```
 
 ## Command line interface

pyproject.toml

@@ -165,14 +165,14 @@ test = [
 # which executes the function `main` from this package when invoked.
 [project.scripts]  # Optional
 #TODO: ADD ANY SCRIPTS WE WANT TO HAVE
-load-file = "icesat2_tracks.analysis_db.B01_SL_load_single_file:load_file_app"
-make-spectra = "icesat2_tracks.analysis_db.B02_make_spectra_gFT:make_spectra_app"
-plot-spectra = "icesat2_tracks.analysis_db.B03_plot_spectra_ov:plot_spectra"
-make-iowaga-threads-prior = "icesat2_tracks.analysis_db.A02c_IOWAGA_thredds_prior:make_iowaga_threads_prior_app"
-make-b04-angle = "icesat2_tracks.analysis_db.B04_angle:make_b04_angle_app"
-define-angle = "icesat2_tracks.analysis_db.B05_define_angle:define_angle_app"
-correct-separate = "icesat2_tracks.analysis_db.B06_correct_separate_var:correct_separate_app"
-icesat2waves = "icesat2_tracks.app:app"
+load-file = "icesat2waves.analysis_db.B01_SL_load_single_file:load_file_app"
+make-spectra = "icesat2waves.analysis_db.B02_make_spectra_gFT:make_spectra_app"
+plot-spectra = "icesat2waves.analysis_db.B03_plot_spectra_ov:plot_spectra"
+make-iowaga-threads-prior = "icesat2waves.analysis_db.A02c_IOWAGA_thredds_prior:make_iowaga_threads_prior_app"
+make-b04-angle = "icesat2waves.analysis_db.B04_angle:make_b04_angle_app"
+define-angle = "icesat2waves.analysis_db.B05_define_angle:define_angle_app"
+correct-separate = "icesat2waves.analysis_db.B06_correct_separate_var:correct_separate_app"
+icesat2waves = "icesat2waves.app:app"
 
 
 # This is configuration specific to the `setuptools` build backend.
@@ -181,7 +181,7 @@ icesat2waves = "icesat2_tracks.app:app"
 # If there are data files included in your packages that need to be
 # installed, specify them here.
 # TODO: ADD ANY DATA FILES WE WANT TO HAVE
-package-data = {"icesat2_tracks" = ["config/*.json"]}
+package-data = {"icesat2waves" = ["config/*.json"]}
 
 [tool.setuptools.packages.find]
 where = ["src"]

src/icesat2_tracks/analysis_db/A02c_IOWAGA_thredds_prior.py → src/icesat2waves/analysis_db/A02c_IOWAGA_thredds_prior.py

@@ -13,15 +13,15 @@
 from siphon.catalog import TDSCatalog
 import typer
 
-from icesat2_tracks.config.IceSAT2_startup import mconfig
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
-import icesat2_tracks.ICEsat2_SI_tools.wave_tools as waves
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-import icesat2_tracks.local_modules.m_general_ph3 as M
-from icesat2_tracks.config.IceSAT2_startup import color_schemes
-from icesat2_tracks.config.IceSAT2_startup import font_for_print
-
-from icesat2_tracks.clitools import (
+from icesat2waves.config.startup import mconfig
+import icesat2waves.tools.iotools as io
+import icesat2waves.tools.wave_tools as waves
+import icesat2waves.local_modules.m_tools_ph3 as MT
+import icesat2waves.local_modules.m_general_ph3 as M
+from icesat2waves.config.startup import color_schemes
+from icesat2waves.config.startup import font_for_print
+
+from icesat2waves.clitools import (
     echo,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/analysis_db/B01_SL_load_single_file.py → src/icesat2waves/analysis_db/B01_SL_load_single_file.py

@@ -16,19 +16,19 @@
     SettingWithCopyWarning,
 )  # TODO: remove when warnings are handled
 
-from icesat2_tracks.config.IceSAT2_startup import (
+from icesat2waves.config.startup import (
     mconfig,
     color_schemes,
     font_for_pres,
     plt,
 )
-import icesat2_tracks.ICEsat2_SI_tools.sliderule_converter_tools as sct
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
-import icesat2_tracks.ICEsat2_SI_tools.beam_stats as beam_stats
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-from icesat2_tracks.local_modules import m_general_ph3 as M
+import icesat2waves.tools.sliderule_converter_tools as sct
+import icesat2waves.tools.iotools as io
+import icesat2waves.tools.beam_stats as beam_stats
+import icesat2waves.local_modules.m_tools_ph3 as MT
+from icesat2waves.local_modules import m_general_ph3 as M
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     validate_track_name,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/analysis_db/B02_make_spectra_gFT.py → src/icesat2waves/analysis_db/B02_make_spectra_gFT.py

@@ -20,15 +20,15 @@
 from matplotlib import pyplot as plt
 import typer
 
-import icesat2_tracks.ICEsat2_SI_tools.generalized_FT as gFT
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
-import icesat2_tracks.ICEsat2_SI_tools.spectral_estimates as spec
-import icesat2_tracks.local_modules.m_general_ph3 as M
-import icesat2_tracks.local_modules.m_spectrum_ph3 as spicke_remover
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-from icesat2_tracks.config.IceSAT2_startup import mconfig
-
-from icesat2_tracks.clitools import (
+import icesat2waves.tools.generalized_FT as gFT
+import icesat2waves.tools.iotools as io
+import icesat2waves.tools.spectral_estimates as spec
+import icesat2waves.local_modules.m_general_ph3 as M
+import icesat2waves.local_modules.m_spectrum_ph3 as spicke_remover
+import icesat2waves.local_modules.m_tools_ph3 as MT
+from icesat2waves.config.startup import mconfig
+
+from icesat2waves.clitools import (
     echo,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/analysis_db/B03_plot_spectra_ov.py → src/icesat2waves/analysis_db/B03_plot_spectra_ov.py

@@ -11,18 +11,18 @@
 from matplotlib.gridspec import GridSpec
 import typer
 
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
-import icesat2_tracks.ICEsat2_SI_tools.generalized_FT as gFT
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-from icesat2_tracks.local_modules import m_general_ph3 as M
-from icesat2_tracks.config.IceSAT2_startup import (
+import icesat2waves.tools.iotools as io
+import icesat2waves.tools.generalized_FT as gFT
+import icesat2waves.local_modules.m_tools_ph3 as MT
+from icesat2waves.local_modules import m_general_ph3 as M
+from icesat2waves.config.startup import (
     mconfig,
     color_schemes,
     plt,
     font_for_print,
 )
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     echo,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/analysis_db/B04_angle.py → src/icesat2waves/analysis_db/B04_angle.py

@@ -6,7 +6,7 @@
 
 import itertools
 
-from icesat2_tracks.config.IceSAT2_startup import (
+from icesat2waves.config.startup import (
     mconfig,
     color_schemes,
     font_for_print,
@@ -15,7 +15,7 @@
 
 
 import h5py
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
+import icesat2waves.tools.iotools as io
 import xarray as xr
 import numpy as np
 from scipy.constants import g
@@ -25,11 +25,11 @@
 import matplotlib.pyplot as plt
 from numba import jit  # maybe for later optimizations?  # noqa: F401
 
-from icesat2_tracks.ICEsat2_SI_tools import angle_optimizer
+from icesat2waves.tools import angle_optimizer
 
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-import icesat2_tracks.local_modules.m_general_ph3 as M
-from icesat2_tracks.ICEsat2_SI_tools import angle_optimizer
+import icesat2waves.local_modules.m_tools_ph3 as MT
+import icesat2waves.local_modules.m_general_ph3 as M
+from icesat2waves.tools import angle_optimizer
 
 import pandas as pd
 
@@ -38,7 +38,7 @@
 
 from typer import Option
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     validate_batch_key,
     validate_output_dir,
     suppress_stdout,

src/icesat2_tracks/analysis_db/B05_define_angle.py → src/icesat2waves/analysis_db/B05_define_angle.py

@@ -9,26 +9,26 @@
 from matplotlib import pyplot as plt
 from typer import Option
 
-from icesat2_tracks.config.IceSAT2_startup import (
+from icesat2waves.config.startup import (
     mconfig,
     color_schemes,
     font_for_print,
 )
 
-from icesat2_tracks.ICEsat2_SI_tools.iotools import init_from_input, ID_to_str
-import icesat2_tracks.ICEsat2_SI_tools.spectral_estimates as spec
+from icesat2waves.tools.iotools import init_from_input, ID_to_str
+import icesat2waves.tools.spectral_estimates as spec
 
 import xarray as xr
 import numpy as np
 import time
-import icesat2_tracks.ICEsat2_SI_tools.lanczos as lanczos
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-import icesat2_tracks.local_modules.m_general_ph3 as M
+import icesat2waves.tools.lanczos as lanczos
+import icesat2waves.local_modules.m_tools_ph3 as MT
+import icesat2waves.local_modules.m_general_ph3 as M
 
 from matplotlib.gridspec import GridSpec
 from scipy.ndimage import label
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     validate_batch_key,
     validate_output_dir,
     suppress_stdout,

src/icesat2_tracks/analysis_db/B06_correct_separate_var.py → src/icesat2waves/analysis_db/B06_correct_separate_var.py

@@ -8,12 +8,12 @@
 
 import h5py
 from pathlib import Path
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io
-import icesat2_tracks.local_modules.m_tools_ph3 as MT
-from icesat2_tracks.local_modules import m_general_ph3 as M
+import icesat2waves.tools.iotools as io
+import icesat2waves.local_modules.m_tools_ph3 as MT
+from icesat2waves.local_modules import m_general_ph3 as M
 import time
 import copy
-import icesat2_tracks.ICEsat2_SI_tools.generalized_FT as gFT
+import icesat2waves.tools.generalized_FT as gFT
 import pandas as pd
 import xarray as xr
 import numpy as np
@@ -22,7 +22,7 @@
 import piecewise_regression
 import typer
 
-from icesat2_tracks.config.IceSAT2_startup import (
+from icesat2waves.config.startup import (
     mconfig,
     color_schemes,
     font_for_pres,
@@ -31,7 +31,7 @@
     fig_sizes,
 )
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     echo,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/app.py → src/icesat2waves/app.py

@@ -3,33 +3,33 @@
 Main CLI for icesat2waves.
 """
 from typer import Typer, Option
-from icesat2_tracks.analysis_db.B01_SL_load_single_file import (
+from icesat2waves.analysis_db.B01_SL_load_single_file import (
     run_B01_SL_load_single_file as _loadfile,
 )
 
-from icesat2_tracks.analysis_db.B02_make_spectra_gFT import (
+from icesat2waves.analysis_db.B02_make_spectra_gFT import (
     run_B02_make_spectra_gFT as _makespectra,
 )
 
-from icesat2_tracks.analysis_db.B03_plot_spectra_ov import (
+from icesat2waves.analysis_db.B03_plot_spectra_ov import (
     run_B03_plot_spectra_ov as _plotspectra,
 )
 
-from icesat2_tracks.analysis_db.A02c_IOWAGA_thredds_prior import (
+from icesat2waves.analysis_db.A02c_IOWAGA_thredds_prior import (
     run_A02c_IOWAGA_thredds_prior as _threddsprior,
 )
 
 
-from icesat2_tracks.analysis_db.B04_angle import run_B04_angle as _run_B04_angle
+from icesat2waves.analysis_db.B04_angle import run_B04_angle as _run_B04_angle
 
-from icesat2_tracks.analysis_db.B05_define_angle import define_angle as _define_angle
+from icesat2waves.analysis_db.B05_define_angle import define_angle as _define_angle
 
-from icesat2_tracks.analysis_db.B06_correct_separate_var import (
+from icesat2waves.analysis_db.B06_correct_separate_var import (
     run_B06_correct_separate_var as _run_correct_separate_var,
 )
 
 
-from icesat2_tracks.clitools import (
+from icesat2waves.clitools import (
     validate_track_name,
     validate_batch_key,
     validate_output_dir,

src/icesat2_tracks/config/generate_colors.py → src/icesat2waves/config/generate_colors.py

@@ -1,5 +1,5 @@
 #%matplotlib inline
-from icesat2_tracks.local_modules import m_colormanager_ph3 as M_color
+from icesat2waves.local_modules import m_colormanager_ph3 as M_color
 
 mconfig['paths']
 path=mconfig['paths']['config']

src/icesat2_tracks/config/IceSAT2_startup.py → src/icesat2waves/config/startup.py

@@ -4,8 +4,8 @@
 
 import matplotlib.pyplot as plt
 
-from icesat2_tracks.local_modules import m_colormanager_ph3 as M_color
-from icesat2_tracks.local_modules import m_tools_ph3 as MT
+from icesat2waves.local_modules import m_colormanager_ph3 as M_color
+from icesat2waves.local_modules import m_tools_ph3 as MT
 
 ## Read folders and configuration paths
 config_dir_path = os.path.dirname(__file__)

src/icesat2_tracks/local_modules/m_spectrum_ph3.py → src/icesat2waves/local_modules/m_spectrum_ph3.py

@@ -4,7 +4,7 @@
 from scipy.special import gammainc
 from scipy import signal
 import matplotlib.pyplot as plt
-from icesat2_tracks.local_modules import m_general_ph3 as M
+from icesat2waves.local_modules import m_general_ph3 as M
 
 try:
     import mkl

src/icesat2_tracks/ICEsat2_SI_tools/beam_stats.py → src/icesat2waves/tools/beam_stats.py

@@ -1,7 +1,7 @@
 import numpy as np
 import pandas as pd
-import icesat2_tracks.ICEsat2_SI_tools.spectral_estimates as spec
-import icesat2_tracks.ICEsat2_SI_tools.iotools as io_local
+import icesat2waves.tools.spectral_estimates as spec
+import icesat2waves.tools.iotools as io_local
 
 import matplotlib.pyplot as plt
 import matplotlib.gridspec as gridspec

src/icesat2_tracks/ICEsat2_SI_tools/generalized_FT.py → src/icesat2waves/tools/generalized_FT.py

@@ -10,8 +10,8 @@
 from scipy.signal import detrend
 import lmfit as LM
 
-from icesat2_tracks.ICEsat2_SI_tools import lanczos, spectral_estimates as spec
-import icesat2_tracks.local_modules.JONSWAP_gamma as spectal_models
+from icesat2waves.tools import lanczos, spectral_estimates as spec
+import icesat2waves.local_modules.jonswap_gamma as spectal_models
 
 
 def rebin(data, dk):

src/icesat2_tracks/ICEsat2_SI_tools/iotools.py → src/icesat2waves/tools/iotools.py

@@ -12,9 +12,9 @@
 import pandas as pd
 import h5py
 from sliderule import icesat2
-from icesat2_tracks.ICEsat2_SI_tools import sliderule_converter_tools as sct
+from icesat2waves.tools import sliderule_converter_tools as sct
 import icesat2_toolkit.utilities
-import icesat2_tracks.ICEsat2_SI_tools.convert_GPS_time as cGPS
+import icesat2waves.tools.convert_GPS_time as cGPS
 
 
 def init_from_input(arguments):

tests/test_steps.py

@@ -102,7 +102,7 @@ def create_script(script_name, track_name="SH_20190502_05180312"):
         "--verbose",
         "--output-dir",
     ]
-    base_path = "src/icesat2_tracks/analysis_db/"
+    base_path = "src/icesat2waves/analysis_db/"
     return head + [f"{base_path}{script_name}.py"] + tail