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v1.21.1

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@tomkinsc tomkinsc released this 27 Jul 21:17
· 186 commits to master since this release
67d15cc

New:
Changed:

  • in WDL workflows, default demultiplexing parameters to support novaseq [#868]
  • in illumina.py::illumina_demux:
    • max_mismatches changed 0 -> 1, and minimum_base_quality: 25 -> 10

Upgraded:

  • samtools (and htslib) 1.7 -> 1.9 [#870]
  • pysam 0.14.1 -> 0.15.0 [#870]
  • picard 2.18.9 -> 2.18.11 [#869]