bump pysam, samtools (#870)

samtools (and htslib) 1.7 -> 1.9 pysam 0.14.1 -> 0.15.0
broadinstitute · Jul 27, 2018 · 67d15cc · 67d15cc
1 parent dcc14e1
commit 67d15cc
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diff --git a/requirements-conda.txt b/requirements-conda.txt
@@ -21,7 +21,7 @@ parallel=20160622
 picard=2.18.11
 pigz=2.4
 prinseq=0.20.4
-samtools=1.7
+samtools=1.9
 snpeff=4.3.1t
 spades=3.11.1
 tbl2asn=25.6
@@ -35,6 +35,6 @@ bedtools=2.27.1
 biopython=1.72
 future==0.16.0
 matplotlib=1.5.3
-pysam=0.14.1
+pysam=0.15.0
 pybedtools=0.7.10
 PyYAML=3.12
diff --git a/tools/samtools.py b/tools/samtools.py
@@ -33,7 +33,7 @@
 import util.misc
 
 TOOL_NAME = 'samtools'
-TOOL_VERSION = '1.7'
+TOOL_VERSION = '1.9'
 
 log = logging.getLogger(__name__)