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Rename everything to brainmapper and explicitly support old cellfinder directories #61

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merged 2 commits into from
Jan 5, 2024

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@adamltyson adamltyson commented Jan 4, 2024

This changes all references to "cellfinder" or "brainglobe-workflows-..." to "brainmapper" and supports output directories with a "brainmapper.json" metadata file when loading combined cell detection & registration results.

Support for directories with a "cellfinder.json" metadata file is supported for backwards compatibility.

Requires brainglobe/brainglobe-workflows#67

Closes #59

@adamltyson adamltyson requested a review from a team January 4, 2024 15:53
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@alessandrofelder alessandrofelder left a comment

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Great 👍

@alessandrofelder alessandrofelder merged commit 6c41f2d into main Jan 5, 2024
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@alessandrofelder alessandrofelder deleted the brainmapper branch January 5, 2024 10:49
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Update old cellfinder CLI reader to use the brainmapper name
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