RF: Parse bval/bvec files uniformly, add n_rows attribute to associations #1899
Workflow file for this run
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| name: Python tests | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set git name/email | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "bids-maintenance" | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install git-annex ubuntu | |
| if: matrix.platform == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: conda install -c conda-forge git-annex | |
| - name: Install git-annex macos | |
| if: matrix.platform == 'macos-latest' | |
| shell: bash -l {0} | |
| run: brew install git-annex | |
| - name: Install git-annex windows | |
| if: matrix.platform == 'windows-latest' | |
| uses: crazy-max/ghaction-chocolatey@v2 | |
| with: | |
| args: install git-annex --yes --ignore-checksums | |
| continue-on-error: true # This can fail for stupid reasons ¯\_(ツ)_/¯ | |
| - name: Install remaining dependencies | |
| shell: bash -l {0} | |
| run: | | |
| which python | |
| pip install datalad | |
| pip install pytest pytest-sugar flake8 pydocstyle | |
| pip install -e ./bids-validator | |
| - name: Check formatting | |
| shell: bash -l {0} | |
| run: | | |
| cd bids-validator | |
| flake8 bids_validator | |
| pydocstyle bids_validator/bids_validator.py | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| cd bids-validator | |
| pytest --doctest-modules bids_validator --verbose |