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Merge pull request #1 from effigies/bep038
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[BEP038] Style and similar cleanups
PeerHerholz authored Feb 6, 2024

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2 parents 6881c9c + 9c803d7 commit 33e55b5
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1 change: 1 addition & 0 deletions mkdocs.yml
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@@ -24,6 +24,7 @@ nav:
- Common data types and metadata: derivatives/common-data-types.md
- Imaging data types: derivatives/imaging.md
- Longitudinal and multi-site studies: longitudinal-and-multi-site-studies.md
- Atlases: atlas.md
- Glossary: glossary.md
- BIDS Extension Proposals: extensions.md
- Appendix:
557 changes: 345 additions & 212 deletions src/atlas.md

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24 changes: 12 additions & 12 deletions src/schema/objects/entities.yaml
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@@ -29,18 +29,18 @@ atlas:
name: atlas
display_name: Atlas
description: |
The definition of atlas per Merriam-Webster is ‘a bound collection of maps (i.e. labeled brain regions
or quantitative aspects) and metadata (tables, or textual matter). Within BIDS, atlases are broadly
defined as a mapping between locations in a spatial coordinate systems and descriptions associated with
those locations. Atlases are often build from registering many subjects or maps to a template. By analogy
with geographical atlases, brain atlases can map brain locations to either discrete labels like a map
of countries does, or to continuous quantities like a topographic map does.

This comprises all possible types of atlases, specifically deterministic, probabilistic, and mask/voxel-based
ones, and quantitative maps from various modalities including but not limited to structural features (e.g.
myelination, cytoarchitecture), functional features (e.g. resting-state networks, localizers) and such based on
multimodal data integration (e.g. gene expression, receptors). Furthermore, it covers both volume/voxel and
surface/vertex data, as well as gray and white matter atlases.
The definition of atlas per Merriam-Webster is ‘a bound collection of maps (i.e. labeled brain regions
or quantitative aspects) and metadata (tables, or textual matter). Within BIDS, atlases are broadly
defined as a mapping between locations in a spatial coordinate systems and descriptions associated with
those locations. Atlases are often build from registering many subjects or maps to a template. By analogy
with geographical atlases, brain atlases can map brain locations to either discrete labels like a map
of countries does, or to continuous quantities like a topographic map does.
This comprises all possible types of atlases, specifically deterministic, probabilistic, and mask/voxel-based
ones, and quantitative maps from various modalities including but not limited to structural features (e.g.
myelination, cytoarchitecture), functional features (e.g. resting-state networks, localizers) and such based on
multimodal data integration (e.g. gene expression, receptors). Furthermore, it covers both volume/voxel and
surface/vertex data, as well as gray and white matter atlases.
ceagent:
name: ce
display_name: Contrast Enhancing Agent

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