freesurfer segmentation results extraction activity example BIDS-Prov

.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/ISSUE_TEMPLATE/spec_update.md

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+---
+name: Propose spec update
+about: Update BIDS-prov specification
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+## Update proposal for BIDS Prov (BEP028)
+
+### Problem Statement
+*What type of enhancement ? Is it a `new feature or a modification` ?
+What `limitation in the current spec` does this underline ?*
+
+### Rationale
+*What `solution` do you propose ? How does that relate to the original problem ?*
+
+### Minimal example
+*Provide a minimal example with the current spec.
+How would this example turn if we `apply the proposed change` ?*
+
+### Checklist 
+- [ ] links to related existing [issues](https://github.com/bids-standard/BEP028_BIDSprov/issues) and/or [PR](https://github.com/bids-standard/BEP028_BIDSprov/pulls)
+

.github/workflows/integration_test.yml

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+name: SPM
+on: 
+  pull_request:
+    paths: 'bids_prov/**'
+jobs:
+  run:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@master
+      - name: Setup Python
+        uses: actions/setup-python@master
+        with:
+          python-version: 3.7
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install pytest
+          pip install -r requirements.txt
+      - name: Test SPM parser on explicit_mask
+        run: |
+          curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/spm_explicit_mask/batch.m
+          python -m bids_prov.spm_parser batch.m -o explicit_mask.json
+
+      - name: Test SPM Parser on groups OLS
+        run: |
+          curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/spm_group_ols/batch.m
+          python -m bids_prov.spm_parser batch.m -o ols.json

.github/workflows/unit_test.yml

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+name: tests
+on: [pull_request]
+jobs:
+  run:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@master
+      - name: Setup Python
+        uses: actions/setup-python@master
+        with:
+          python-version: 3.7
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install pytest
+          pip install -r requirements.txt
+      - name: Unit tests
+        run: pytest bids_prov

.gitignore

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 **/*.hdr
 **/*.img
+*.gv*
+settings.json
+**/*.gz
+.datalad
+**/*.tsv
+*.png
+*.json
+**/*.pyc
+
+*.DS_Store
+*.ipynb_checkpoints
+

.pre-commit-config.yaml

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+repos:
+-   repo: https://github.com/python/black
+    rev: stable
+    hooks:
+    - id: black
+      language_version: python3.7